Summary bugs page

Open bugs

aeskulap (2)
489371	aeskulap : [INTL:pt] Updated Portuguese translation for package messages	wishlist
492842	aeskulap: LP bug 229681: Aeskulap images not seen	important

arb (1)
364908	Please build arb for powerpc	wishlist

bioperl (1)
266921	bioperl: AlignIO::next_aln does not return multiple alignments for bl2seq	normal

cimg-dev (4)
363199	Spelling mistake in package description	minor
399846	[CImg]: Please update to 1.2.8	normal
460024	cimg-dev: Please update dependencies to libfftw3-3	important
497672	cimg-dev: Update to version 1.2.9	normal

ctsim (3)
462189	wxwindows2.4 is scheduled to be removed	serious
488286	ctsim: please switch to libfftw3-dev	wishlist
488287	ctsim: still depends on xlibmesa-gl-dev	minor

cycle (3)
422878	cycle: Cycle failed to export to iCal	normal
433759	cycle: Specific french caracters as password lead to crash	normal
444776	typo	normal

dcmtk (1)
436758	dcmtk: not handling nostrip build option (policy 10.1)	wishlist

emboss (4)
441063	emboss: Bash auto-completion for EMBOSS	wishlist
485330	emboss: FTBFS when converted to new source format 3.0 (quilt): non-unidiff patch	wishlist
487539	embossversion -full reports wrong RootDirectory and BaseDirectory	normal
503733	emboss: Broken links to some manpages	minor

fsl (1)
504500	fsl: feat fails with design.fsf from 4.0	important

fslview (2)
442177	fslview: pukes on int8 dataformat. the other tools at least complain properly	normal
450572	fslview switches left-right orientation on edit/save mask	normal

imagej (1)
502789	imagej: Crashes at startup	normal

kalign (2)
446047	kalign: Please enable bash-completion	wishlist
456479	kalign: debian/watch fails to report upstream's version	minor

libchipcardc2 (1)
491970	installing gnucash causes chipcard daemon to run	normal

maq (1)
492979	maq: Typo in short description	minor

mssstest (1)
450107	mssstest: debian/watch fails to report upstream's version	minor

muscle (1)
285398	muscle: package name conflicts with existing M.U.S.C.L.E. project	wishlist

ncbi-tools-x11 (1)
225651	ncbi-tools-x11: want Cn3D++	wishlist

octave3.0 (9)
418158	poisscdf fails for large arguments due to the algorithm in D9LGIT	normal
472069	octave3.0: plotyy leaves remains on future graphs	normal
492078	octave3.0: cannot change axes location in pcolor	normal
492993	octave3.0: doc patch for outerposition	minor
493869	octave3.0: gaminv and gamcdf crash for big values of parameter A	normal
501016	octave3.0: sumskipnan undefined?	normal
501022	[octave3.0] Does not recognise packages	normal
501648	reminder: octave3.0-common must conflict with older octave3.0 packages	wishlist
502110	octave3.0: errorbar fails because of bug, with patch	normal

paw (1)
374978	paw: Name clashes possible between PAW user variables and system library functions	normal

perlprimer (1)
434721	perlprimer: first display of tabs is slow on a fast machine.	normal

plink (1)
503367	plink: file conflict with putty-tools	serious

pymol (4)
376108	pymol: fail to start with freeglut error	important
379386	pymol: always make my X hang under amd64+smp+fglrx	normal
482535	pymol: Pymol does not recognize "biological entity" files from wwwpdb.org	wishlist
486254	fit command	normal

python-biopython (1)
478457	python-biopython: should use python-numpy instead of python-num{eric,array}	important

rasmol (2)
400073	rasmol: crashes when using keyboard shortcuts	normal
498261	rasmol-gtk: segfaults when more than one file is given on commandline	important

texlive-latex-extra (21)
351763	tetex-base: Consider including exceltex.sty	wishlist
379651	texlive-latex-extra: Incomplete documentation	normal
394408	texlive-latex-extra: Typo in bibleref.sty	normal
407150	Consider including exceltex.sty	wishlist
407970	count1to.sty conflicts with hyperref	normal
408544	texlive-latex-extra: No documentation for expdlist.sty	minor
415003	texlive-latex-extra: newlfm doesn't properly obey 'nofrom' options	normal
423406	soul.sty: "Reconstruction failed" if \hl command contains "\ "	normal
427355	texlive-latex-extra: documentation of paralist missing	normal
429812	pstricks incompatibility in tableau.sty	normal
432034	texlive-latex-extra: Please ship wordcount.sh	wishlist
432745	/usr/share/texmf-texlive/tex/latex/preprint/figcaps.sty: Breaks \label and \ref with figures	normal
439994	moderncv: too old	wishlist
464586	texlive-latex-extra: package invoice can not be used without realcalc.tex from texlive-generic-extra	normal
467326	europecv: Incorrect orthography in ecvde.def	minor
468145	texlive-latex-extra: typo in EuropeCV LV translation of "understanding"	normal
470141	todo.sty comaplains about bad space factor	normal
471205	Documentation missing for lastpage	normal
473216	texlive-latex-extra: foilhtml.sty undistributable?	important
493778	texlive-latex-extra: too long package description	wishlist
501520	flashcards: fails with "Package geometry Error"; even on the example page	normal

tree-puzzle (1)
489678	tree-puzzle: Uses a local copy of libsprng.	important

Fixed bugs

adun.app (4)
416859	FTBFS with GCC 4.3: the meaning of "inline" changed in C99	important	0.8.2-1
450469	adun.app: FTBFS: /bin/sh: /usr/lib/GNUstep/System/Library/Makefiles/GNUstep.sh: No such file or directory	serious	0.8.2-1
457723	adun.app 0.6-3 (mipsel/unstable): FTBFS: assumes accessible $HOME	serious	0.8.2-1
459744	adun.app - FTBFS: /usr/lib/GNUstep/System/Library/Makefiles/GNUstep.sh: No such file or directory	serious	0.8.2-1

arb (1)
495650	Non-existant default dir in /etc/arb/arb_tcp.dat	normal	0.0.20071207.1-5

clustalw (3)
359712	clustalw: Dead link in the package description	wishlist	1.83-2
374241	clustalw: lesstif1 is deprecated, transition to lesstif2	normal	1.83-2
380715	clustalw: FreeDesktop integration and Debian menu fix	wishlist	1.83-2

clustalx (1)
429480	clustalx segfault with lesstif2=1:0.95.0-2	grave	clustalw/1.83-3

exonerate (1)
479323	exonerate version 2.0 is now available.	wishlist	2.0.0-1

fslview (4)
474447	fslview: recommends packages not in main	important	3.0+4.0.2-4 3.0+4.0.2-3lenny1
475993	fslview: FTBFS: application.h:25:19: error: qlist.h: No such file or directory	serious	3.0+4.0.2-4 3.0+4.0.2-3lenny1
494340	fslview: FTBFS in lenny: CMake errors	serious	3.0+4.0.2-5 3.0+4.0.2-3lenny2
502083	FTBFS: on armel: --as-needed not working	serious	3.0.2+4.1.0-3 3.0+4.0.2-3lenny2

ghemical (2)
448170	ghemical: Requires libopenbabel1 which is not available	serious	2.95-2
448433	ghemical uninstallable due to non-existent versions of libmopac and libopenbabel	serious	2.95-2

gromacs (1)
470000	gromacs: spurious libxml build-dep	serious	3.3.3-2

hmmer (4)
175481	hmmer: Please split documentation from binary package	wishlist	2.3.2-1
197658	hmmer conflicts with ncbi-tools-bin over getseq	normal	2.3.2-1
233374	Inefficient packaging of arch independent data in package hmmer	normal	2.3.2-1
261293	hmmer: New upstream release (v2.3.2)	wishlist	2.3.2-1

imagej (3)
496798	ImageJ: Run script does not allow to change maximum size of JVM heap	normal	1.41n-1
496802	ImageJ: New upstream release available	wishlist	1.41n-1
503777	imagej: java bytecode / java runtime version mismatch	serious

minc-tools (1)
459834	minc-tools: ..lay off `/usr/bin/extract', belongs to extract.	serious	minc/2.0.14-2

mipe (1)
485011	mipe: Drop dependency on libcgi-perl: CGI.pm is in perl proper	serious	1.1-3

ncbi-epcr (1)
385256	ncbi-epcr: New upstream version available	wishlist	epcr/2.3.9-1

octave3.0 (6)
492070	octave3.0: about axes properties in the manual	minor	1:3.0.3-1
492076	octave3.0: incorrect axis location properties	normal	3.0.2-1
492168	octave3.0: shading doc unclear and poor default shading for pcolor	minor	1:3.0.3-1
492223	octave3.0: contourf only accepts vector X and Y if same size	normal	1:3.0.3-1
492224	octave3.0: contourf is not documented	minor	1:3.0.3-1
492992	octave3.0: varargin not present in the manual index	normal	1:3.0.3-1

paw (2)
421985	FTBFS: /usr/bin/ld: cannot find -lXbae	serious	1:2.14.04.dfsg.2-1
440755	Should fortran dependency be gfortran not g77?	normal	1:2.14.04.dfsg.2-2

phylip (2)
367237	phylip: New upstream release	wishlist	1:3.65-1
381140	phylip: Incomplete copyright statement	normal	1:3.65-1

pymol (3)
148399	pymol: Missing manpage	wishlist	1.1-1
478034	pymol: FTBFS on arm/armel with gcc-4.3; please build with gcc-4.2 there	serious	1.1~beta3-3
490067	pymol: Pymol cannot find file cmyk.png	normal	1.1-1

r-base-core (4)
451152	searching in wrong tcl path?	normal	r-base/2.6.0-4
491637	/usr/lib/R/etc/Renviron.ucf: Causes false positive with debsums	normal	r-base/2.7.1-2
496418	The possibility of attack with the help of symlinks in some Debian packages	grave	r-base/2.7.2-1 r-base/2.7.1-1+lenny1
498520	Rprofile.site configuration file not under /etc	normal	r-base/2.7.2-2

texlive-latex-extra (5)
385213	texlive-latex-extra should suggest texlive-latex-recommended	normal	texlive-base/2005.dfsg.2-1
418989	algorithmic.sty no longer texlive-latex-extra	normal	texlive-base/2007-3
429813	no license and copyright information for tex/latex/tableaux/*	serious	texlive-extra/2007.dfsg.1-1
502002	texlive-latex-extra: hilowres.sty is non-free	serious	texlive-extra/2007.dfsg.8-1
502515	texlive-latex-extra: kalendar is non-free	serious	texlive-extra/2007.dfsg.8-1

texlive-science (1)
501272	texlive-science: newalg nonfree	serious	texlive-extra/2007.dfsg.7-1