Summary bugs page

Open bugs

arb (1)
364908	Please build arb for powerpc	wishlist

bioperl (1)
266921	bioperl: AlignIO::next_aln does not return multiple alignments for bl2seq	normal

cimg-dev (3)
363199	Spelling mistake in package description	minor
399846	[CImg]: Please update to 1.2.2	normal
460024	cimg-dev: Please update dependencies to libfftw3-3	important

clustalw (1)
479680	clustalw_2.0.5-1(ia64/unstable): FTBFS: ISO C++ forbids declaration of 'auto_ptr' with no type	serious

ctn (2)
326916	ctn: CTN seems to be incompatible with MySQL Versions > 4.0	important
466671	ctn: Please move Homepage from long description to tags	wishlist

ctsim (1)
462189	wxwindows2.4 is scheduled to be removed	serious

cycle (3)
422878	cycle: Cycle failed to export to iCal	normal
433759	cycle: Specific french caracters as password lead to crash	normal
444776	typo	normal

dcmtk (1)
436758	dcmtk: not handling nostrip build option (policy 10.1)	wishlist

dialign-t (1)
462876	dialign-t: packaging bug	normal

emboss (2)
441063	emboss: Bash auto-completion for EMBOSS	wishlist
476626	emboss: emma does not work with clustalw > 2.0	important

exonerate (1)
479323	exonerate version 2.0 is now available.	wishlist

fslview (2)
442177	fslview: pukes on int8 dataformat. the other tools at least complain properly	normal
450572	fslview switches left-right orientation on edit/save mask	normal

kalign (2)
446047	kalign: Please enable bash-completion	wishlist
456479	kalign: debian/watch fails to report upstream's version	minor

mencal (1)
449949	mencal: debian/watch fails to report upstream's version	minor

mipe (2)
449990	mipe: debian/watch fails to report upstream's version	minor
458400	mipe: typo in debian/control affecting package long description	wishlist

mssstest (1)
450107	mssstest: debian/watch fails to report upstream's version	minor

murasaki (3)
160715	murasaki: missing man pages	normal
378318	FTBFS(hppa): error: 'BITS_PER_LONG' undeclared here (not in a function)	serious
437598	murasaki: not handling nostrip build option (policy 10.1)	wishlist

muscle (1)
285398	muscle: package name conflicts with existing M.U.S.C.L.E. project	wishlist

ncbi-tools-x11 (1)
225651	ncbi-tools-x11: want Cn3D++	wishlist

octave2.1 (3)
348480	polyfit breaks down over "large" x values	normal
367165	octave2.1: please put runtime libraries in /usr/lib, not /usr/lib/octave-VERSION	wishlist
477348	octave2.1: documentation of randn lacking detail	minor

perlprimer (1)
434721	perlprimer: first display of tabs is slow on a fast machine.	normal

pymol (3)
148399	pymol: Missing manpage	wishlist
376108	pymol: fail to start with freeglut error	important
379386	pymol: always make my X hang under amd64+smp+fglrx	normal

python-biopython (1)
478457	python-biopython: should use python-numpy instead of python-num{eric,array}	important

r-base-core (2)
476420	r-base-core: please improve Renviron's R_PAPERSIZE_USER management	wishlist
481058	r-base-core: Please add a Homepage field to control information	wishlist

rasmol (2)
400073	rasmol: crashes when using keyboard shortcuts	normal
460990	rasmol: Association between RasMol and PDB files.	wishlist

texlive-latex-extra (22)
154266	empty \unterschrift doesn't work in g-brief	normal
351763	tetex-base: Consider including exceltex.sty	wishlist
379651	texlive-latex-extra: Incomplete documentation	normal
394408	texlive-latex-extra: Typo in bibleref.sty	normal
407150	Consider including exceltex.sty	wishlist
407968	empty \unterschrift doesn't work in g-brief	normal
407970	count1to.sty conflicts with hyperref	normal
408544	texlive-latex-extra: No documentation for expdlist.sty	minor
415003	texlive-latex-extra: newlfm doesn't properly obey 'nofrom' options	normal
423406	soul.sty: "Reconstruction failed" if \hl command contains "\ "	normal
423919	g-brief fails with redefined command \Telefon	normal
427355	texlive-latex-extra: documentation of paralist missing	normal
429812	pstricks incompatibility in tableau.sty	normal
432034	texlive-latex-extra: Please ship wordcount.sh	wishlist
432745	/usr/share/texmf-texlive/tex/latex/preprint/figcaps.sty: Breaks \label and \ref with figures	normal
439994	moderncv: too old	wishlist
464586	texlive-latex-extra: package invoice can not be used without realcalc.tex from texlive-generic-extra	normal
467326	europecv: Incorrect orthography in ecvde.def	minor
468145	texlive-latex-extra: typo in EuropeCV LV translation of "understanding"	normal
470141	todo.sty comaplains about bad space factor	normal
471205	Documentation missing for lastpage	normal
473216	texlive-latex-extra: foilhtml.sty undistributable?	important

zope-zms (1)
479128	zope-zms: uses the non-standard 'Url' entry	normal

Fixed bugs

adun.app (4)
416859	FTBFS with GCC 4.3: the meaning of "inline" changed in C99	important	0.8.2-1
450469	adun.app: FTBFS: /bin/sh: /usr/lib/GNUstep/System/Library/Makefiles/GNUstep.sh: No such file or directory	serious	0.8.2-1
457723	adun.app 0.6-3 (mipsel/unstable): FTBFS: assumes accessible $HOME	serious	0.8.2-1
459744	adun.app - FTBFS: /usr/lib/GNUstep/System/Library/Makefiles/GNUstep.sh: No such file or directory	serious	0.8.2-1

arb (4)
341558	arg [INTL:pt] Portuguese translation of debconf's messages	wishlist	0.0.20071207-1
356713	[l10n] Updated Czech translation for arb debconf	wishlist	0.0.20071207-1
392683	[l10n] Updated Czech translation for arb debconf	wishlist	0.0.20071207-1
446666	arb: should this package be removed?	serious	0.0.20071207-1

clustalw (5)
359712	clustalw: Dead link in the package description	wishlist	1.83-2
374241	clustalw: lesstif1 is deprecated, transition to lesstif2	normal	1.83-2
380715	clustalw: FreeDesktop integration and Debian menu fix	wishlist	1.83-2
469442	source clustalw builds binary package clustalx	important	2.0.4-1
469443	source clustalw builds binary package clustalx	important	2.0.4-1

clustalw-mpi (1)
466017	New version available, homepage has changed	wishlist

clustalx (1)
429480	clustalx segfault with lesstif2=1:0.95.0-2	grave	clustalw/1.83-3

dialign (1)
449953	dialign: debian/watch fails to report upstream's version	minor	2.2.1-2

fslview (2)
474447	fslview: recommends packages not in main	important	3.0+4.0.2-4
475993	fslview: FTBFS: application.h:25:19: error: qlist.h: No such file or directory	serious	3.0+4.0.2-4

ghemical (4)
417197	FTBFS with GCC 4.3: missing #includes	important	2.95-1
447628	ghemical: Spin Multiplicity unknown	minor	2.95-3
448170	ghemical: Requires libopenbabel1 which is not available	serious	2.95-2
448433	ghemical uninstallable due to non-existent versions of libmopac and libopenbabel	serious	2.95-2

gromacs (3)
446726	file conflicts between packages	serious	radiance/3r8+20070924.dfsg-2
456860	gromacs: FTBFS: checking size of int... configure: error: cannot compute sizeof (int)	serious	3.3.2-3
470000	gromacs: spurious libxml build-dep	serious	3.3.3-2

hmmer (4)
175481	hmmer: Please split documentation from binary package	wishlist	2.3.2-1
197658	hmmer conflicts with ncbi-tools-bin over getseq	normal	2.3.2-1
233374	Inefficient packaging of arch independent data in package hmmer	normal	2.3.2-1
261293	hmmer: New upstream release (v2.3.2)	wishlist	2.3.2-1

loki (1)
409370	loki: missing 64-bit executable	normal	2.4.7.4-4

medcon (1)
401529	medicon: Segmentation fault!	serious	x0.9.9.4-1

minc-tools (4)
450922	minc: New version avialable	wishlist	minc/2.0.14-1
457072	mincview: needs 'xv' but it's not listed in package 'Depends' section	normal	minc/2.0.14-1
457074	minc-tools: 'mincpik' requires missing PERL Getopt::Tabular module	normal	minc/2.0.14-1
459834	minc-tools: ..lay off `/usr/bin/extract', belongs to extract.	serious	minc/2.0.14-2

mummer (1)
450211	mummer: debian/watch fails to report upstream's version	minor	3.20-1

ncbi-epcr (1)
385256	ncbi-epcr: New upstream version available	wishlist	epcr/2.3.9-1

njplot (1)
450104	njplot: debian/watch fails to report upstream's version	minor	2.0-2

octave2.1 (7)
415780	octave2.1: Please upgrade gnuplot dependency from suggests: to recommends:	wishlist	2.9.10-4
417486	[should not ship with Lenny] FTBFS with GCC 4.3: missing #includes	important	1:2.1.73-17
433362	octave should recommend gnuplot, not suggest it	normal	1:2.1.73-14
435205	octave2.1: copyright file incorrectly lists GPLv2 only	minor	1:2.1.73-17
441721	[should not ship with Lenny] octave2.1: package content changed if build twice or more times in a row	serious	1:2.1.73-17
463301	octave2.1: non-standard gcc/g++ used for build (g++-4.1)	important	1:2.1.73-17
474853	octave2.1: FTBFS: munge-texi.cc:42: error: 'exit' was not declared in this scope	serious	1:2.1.73-19

phylip (2)
367237	phylip: New upstream release	wishlist	1:3.65-1
381140	phylip: Incomplete copyright statement	normal	1:3.65-1

pymol (10)
214026	pymol and opengl	normal
231844	pymol: Small Error on startup	minor
231845	pymol: Carton riboons: object rep3 not found.	minor	0.98+0.99rc6-2
259013	pymol: Fragment not found while building	normal
277349	pymol: python module distutils.spawn not found - missing dependency on python2.3-dev	normal
277351	pymol: Pymol clutters .xsession-errors with log messages	normal
295861	python-pmw: Warnings during configure phase	minor
310744	pymol: segmentation fault on nvidia hardware	important
468989	pymol: may use different memory API for a given memory block	important	1.1~beta3-2
478034	pymol: FTBFS on arm/armel with gcc-4.3; please build with gcc-4.2 there	serious	1.1~beta3-3

r-base-core (2)
451152	searching in wrong tcl path?	normal	r-base/2.6.0-4
475343	Rscript searches for R binary in /tmp, rather than /usr/bin	minor	r-base/2.7.0~20080416-1

rasmol (1)
442810	not honouring colour or orientation in postscript export	important	2.7.3.1-3

texlive-latex-extra (6)
385213	texlive-latex-extra should suggest texlive-latex-recommended	normal	texlive-base/2005.dfsg.2-1
418989	algorithmic.sty no longer texlive-latex-extra	normal	texlive-base/2007-3
429150	texlive-latex-extra: Compilation problem with vita.cls	normal	texlive-extra/2007.dfsg.1-2
429813	no license and copyright information for tex/latex/tableaux/*	serious	texlive-extra/2007.dfsg.1-1
464219	Please include documentation for pbox.sty	important	texlive-extra/2007.dfsg.1-2
477794	texlive-latex-extra: everypage bug is not usuable please consider to update	important	texlive-extra/2007.dfsg.1-2

texlive-science (1)
477152	please fix docstrip that it does not write mildly misleading comments into the generated files	important	texlive-extra/2007.dfsg.2-1

tigr-glimmer (3)
385258	tigr-glimmer: New upstream version available, problem with watchfile	minor	3.02-1
403793	tigr-glimmer: FTBFS on GNU/kFreeBSD	important
461691	FTBFS with GCC 4.3: uses (removed) pre-iso c++ headers	important	2.13-1.1

treeviewx (1)
455177	FTBFS with GCC 4.3: missing #includes	important	0.5.1-5

wise (1)
478639	wise: bashism in debian/rules	important	2.4.1-5

zope-zms (2)
373667	zope-zms: CVE-2006-2997: cross-site scripting	normal
478644	zope-zms: bashism in debian/rules	important	1:2.10.4-20-1