Summary

Bugs of package med-bio

Total bugs: 49

Open bugs: 28

Fixed bugs: 21

Links to other tasks

Tasks overview

Biology 28 (332)

Biology development 8 (18)

Content management 0 (0)

Medical data 0 (0)

Epidemiology 0 (0)

Hospital information systems 0 (0)

Imaging 63 (398)

Imaging development 42 (291)

Laboratory 0 (0)

Pharmacy 1 (3)

Physics 12 (118)

Practice 11 (66)

Psychology 2 (24)

Statistics 1 (0)

Tools 5 (37)

Typesetting 59 (320)

Legend

Severity	Dependent	Suggested
critical	0	0
grave	0	0
serious	8	0
important	2	1
normal	6	1
minor	0	0
wishlist	6	4

Summary bugs page of Biology meta package

Immediately looking into bugs of the dependencies of this metapackage is advised (332)^*

Open bugs in dependent packages

8 serious, 2 important, 6 normal, 6 wishlist

adun.app (1) Homepage: http://diana.imim.es/Adun Vcs Debian Med Packaging Team
560514	adun.app: FTBFS: ../ULFramework/ULFrameworkFunctions.h:35: error: expected declaration specifiers or '...' before 'AdDataMatrix'	pending
ball (4) Homepage: http://www.ballview.org Vcs Andreas Hildebrandt
546311	ball - FTBFS: Sorry - this architecture is currently not supported...
551241	ball: FTBFS: atom.sip:23: error: 'sipIsErr' was not declared in this scope
552809	FTBFS on armel, broken configure
553925	[ball] FTBFS
emboss (2) Homepage: http://emboss.sourceforge.net Vcs Debian Med Packaging Team
441063	emboss: Bash auto-completion for EMBOSS
558852	Resolve unresolved symbols in shared libraries
ncbi-tools6 (1) Homepage: http://www.ncbi.nih.gov/BLAST/ Not maintained in Vcs Aaron M. Ucko
225651	ncbi-tools-x11: want Cn3D++
perlprimer (1) Homepage: http://perlprimer.sourceforge.net Vcs Debian Med Packaging Team
434721	perlprimer: first display of tabs is slow on a fast machine.
plink (1) Homepage: http://pngu.mgh.harvard.edu/~purcell/plink/ Vcs Debian Med Packaging Team
536676	plink: FTBFS on MIPS.
pymol (4) Homepage: http://www.pymol.org Vcs Debichem Team
505630	pymol: Builder module doesnt' work	etch
506202	Please split up package into pymol and pymol-data
556878	python can't import pymol
560412	png does not work as expected anymore with batch mode
rasmol (2) Homepage: http://rasmol.org Vcs Debian Science Maintainers
400073	rasmol: crashes when using keyboard shortcuts
548652	new upstream version 2.7.5	help
samtools (2) Homepage: http://samtools.sourceforge.net Vcs Debian-Med Packaging Team
544976	samtools: Static library built with -fPIC.
549427	samtools 0.1.6~dfsg-1 FTBFS on sparc: bus error
seaview (1) Homepage: http://pbil.univ-lyon1.fr/software/seaview.html Vcs Debian-Med Packaging Team
560438	seaview: FTBFS: use_mase_files.cxx:1437: error: invalid conversion from 'const char' to 'char'
staden-io-lib (2) Homepage: http://staden.sourceforge.net/ Vcs Debian-Med Packaging Team
541676	staden-io-lib: FTBFS on alpha: 5 of 5 tests failed
544751	libbio-scf-perl - FTBFS: Needs to use endian.h (Neither BIG nor LITTLE endian defined.)
tigr-glimmer (1) Homepage: http://www.cbcb.umd.edu/software/glimmer Vcs Debian-Med Packaging Team
560442	tigr-glimmer: FTBFS: gene.cc:449: error: invalid conversion from 'const char' to 'char'

Open bugs in suggested packages

1 important, 1 normal, 4 wishlist

arb (5) Homepage: http://www.arb-home.de/ Vcs Debian-Med Packaging Team
364908	Please build arb for powerpc
522021	arb_0.0.20071207.1-7(mips/experimental): FTBFS: missing -fPIC
536516	arb: [INTL:fi] Finnish translation of the debconf templates	l10n, patch
537534	[INTL:gl] arb debconf translation update	l10n
554882	[INTL:ja] please add Japanese po-debconf template translation (ja.po)	l10n, patch
emboss-explorer (1) Homepage: http://embossgui.sourceforge.net/ Vcs Debian-Med Packaging Team
485735	Can not serve images of help pages to other computers.

Done bugs

adun.app (1) Homepage: http://diana.imim.es/Adun Vcs Debian Med Packaging Team
520917	Updated watch file	patch
arb (2) Homepage: http://www.arb-home.de/ Vcs Debian-Med Packaging Team
516958	arb: [INTL:pt] Updated Portuguese translation for debconf messages	l10n, patch
517710	arb: please improve long description
clustalw (1) Homepage: http://www.clustal.org/ Vcs Debian Med Packaging Team
550895	clustalw: new debian/watch
clustalx (1) Homepage: http://www.clustal.org/ Vcs Debian Med Packaging Team
550893	clustalx: debian/watch file
epcr (1) Homepage: http://www.ncbi.nlm.nih.gov/sutils/e-pcr/ Vcs Debian-Med Packaging Team
385256	ncbi-epcr: New upstream version available
gamgi (1) Homepage: http://www.gamgi.org/ Vcs Debichem Team
554372	FTBFS with binutils-gold
hmmer (4) Homepage: http://hmmer.janelia.org/ Vcs Debian-Med Packaging Team
175481	hmmer: Please split documentation from binary package
197658	hmmer conflicts with ncbi-tools-bin over getseq
233374	Inefficient packaging of arch independent data in package hmmer
261293	hmmer: New upstream release (v2.3.2)
melting (1) Homepage: http://www.ebi.ac.uk/compneur-srv/melting/ Vcs Debian Med Packaging Team
549881	melting-gui: Does not work at all.
melting (1) Homepage: http://www.ebi.ac.uk/compneur-srv/melting/ Vcs Debian Med Packaging Team
549881	melting-gui: Does not work at all.
plink (1) Homepage: http://pngu.mgh.harvard.edu/~purcell/plink/ Vcs Debian Med Packaging Team
503367	plink: file conflict with putty-tools
pymol (2) Homepage: http://www.pymol.org Vcs Debichem Team
533794	pymol: non-standard gcc/g++ used for build (gcc-4.2)
550721	Debian wrapper gives error "pymol is a package and cannot be directly executed"
r-bioc-hilbertvis (1) Homepage: http://www.ebi.ac.uk/~anders/hilbert Vcs Debian-Med Packaging Team
557031	FTBFS: ERROR: lazy loading failed for package 'HilbertVis'
rasmol (2) Homepage: http://rasmol.org Vcs Debian Science Maintainers
498261	rasmol-gtk: segfaults when more than one file is given on commandline
520524	Fixed watch file	patch
readseq (1) Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/ Vcs Debian Med Packaging Team
552830	readseq: FTBFS: ureadseq.c:145: error: conflicting types for 'getline'	confirmed, patch
t-coffee (1) Homepage: http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html Vcs Debian Med Packaging Team
536956	t-coffee: FTBFS: dpkg-gencontrol: error: error occurred while parsing Suggests field: boxshade, seaview, t-coffee-doc, t-coffee-examples	confirmed

^*To estimate the overall status of the packages in the dependencies of a metapackage a weighted severity is calculated. Done bugs are ignored and bugs in dependent and recommended packages are weighted by factor three compared to suggested packages. Release critical bugs have a much larger weight than important, while the contribution of normal bugs is even smaller and minor bugs have a very small weight. Wishlist bugs are ignored in this calculation. The resulting sum is compared to some boundaries to find a verbal form. The actual numbers need some adjustment to make real sense - this evaluation method is in testing phase.
The severities of bugs are weighted as follows:

critical	10
grave	10
serious	10
important	5
normal	3
minor	1
wishlist	0