information
The Debian-Med project presents packages that are associated with
- medicine
- pre-clinical research
- life science.
Its developments are mostly focused on three areas for the moment:
- medical practice
- imaging
- bioinformatics
and can be installed directly from every Debian installation.
|
QA report
| Newer upstream available (13) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
altree
(alphy, altree, altree-examples, libcutils-perl) |
|
|
|
1.1.0
|
arb [non-free]
(arb, arb-common, arb-doc, libarb) |
|
0.0.20071207-1
|
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5.0
|
| cluster3 [non-free]
|
|
|
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1.47
|
ctn
(ctn, ctn-dev) |
|
|
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3.2.0
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| fact++ |
|
|
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1.3.0
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| kempbasu |
|
|
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0.9.1.tar.gz
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libgenome
(libgenome-1.3-0, libgenome-1.3-0-dev, libgenome-1.3-dev) |
|
|
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2.2.0
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libmems
(libmems-1.6-1, libmems-1.6-1-dev, libmems-1.6-dev) |
|
|
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2.2.0
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| meme [non-free]
|
|
|
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3.5.0
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| netepi-collection |
|
|
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1.3.0
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pdb2pqr
(pdb2pqr, pdb2pqr-doc, propka) |
|
|
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1.4.0
|
| treeplot |
|
|
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0.7.2
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vista
(libvista-2-1, libvista-2-dev, vista-tools) |
|
|
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2.2.1
|
| Ready for upload (120) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
(acedb-other, acedb-other-belvu, acedb-other-dotter, belvu, dotter, efetch) |
|
|
|
Invalid
(copyright info)
|
| |
|
0.8.2-1
|
|
Invalid
(copyright info)
|
| alien-hunter |
|
|
|
1.7
|
autodocksuite
(autodock, autodock-test, autogrid, autogrid-test) |
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4.2.2.1
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| |
|
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Missing
(copyright info)
|
| |
|
|
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Missing
(copyright info)
|
ball
(ballview, libball1.3, libball1.3-dev, libball1.3-doc, libballview1.3, libballview1.3-dev, python-ball, python-ballview) |
|
|
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1.3.0
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biococoa
(libbiococoa-dev, libbiococoa2) |
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|
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2.2.0
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biofox
(mozilla-biofox) |
|
|
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1.1.5
|
(libbiojava-java, libbiojava-java-demos, libbiojava-java-doc, libbiojava1.7-java) |
|
|
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1.5
|
| |
|
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Missing
(copyright info)
|
| bioperl |
|
1.5.2.102-1
|
|
1.6.1
|
| bioperl-run |
|
|
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1.6.1
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bioruby
(libbio-ruby, libbio-ruby1.8) |
|
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1.3.1
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biosquid
(biosquid, biosquid-dev) |
|
|
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1.9g
|
btk-core
(libbtk-core-dev) |
|
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0.8.1
|
| |
|
|
|
NotFound
(copyright info)
|
| clustalw [non-free]
|
|
1.83-3
|
|
2.0.12
|
| [non-free]
|
|
|
|
NotFound
(copyright info)
|
| clustalx [non-free]
|
|
|
|
2.0.12
|
(ncoils) |
|
|
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Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| dazzle |
|
|
|
1.01
|
dcmtk
(dcmtk, dcmtk-doc, dcmtk-www, libdcmtk1, libdcmtk1-dev) |
|
|
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3.5.4
|
(dialign-t, dialign-t-doc, dialign-tx, dialign-tx-data) |
|
0.2.2.dfsg-1
|
|
Invalid
(copyright info)
|
| dicom3tools |
|
|
|
1.0~20091113
|
| dicomscope |
|
|
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3.6.0
|
| embassy-domainatrix |
|
0.1.0-1
|
|
0.1.0
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| embassy-domalign |
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0.1.0-1
|
|
0.1.0
|
| embassy-domsearch |
|
|
|
0.1.0
|
| embassy-phylip [non-free]
|
|
|
|
3.68
|
emboss-explorer
(emboss-explorer, libemboss-acd-perl) |
|
|
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2.2.0
|
epcr
(ncbi-epcr) |
|
|
|
2.3.12
|
| epigrass |
|
|
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2.0b3
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| exonerate |
|
1.4.0-1
|
|
2.2.0
|
| |
|
|
|
Missing
(copyright info)
|
(fastlink, fastlink-doc) |
|
|
|
Missing
(copyright info)
|
gdcm
(${python:Provides}, libgdcm-cil, libgdcm-java, libgdcm-tools, libgdcm2-dev, libgdcm2.0, libgdcm2.0-dbg, libvtkgdcm-cil, libvtkgdcm-java, libvtkgdcm-tools, libvtkgdcm2-dev, libvtkgdcm2.0, python-gdcm, python-vtkgdcm) |
|
|
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2.0.14
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gdpc
(gdpc, gdpc-examples) |
|
|
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2.2.5
|
| |
|
|
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DownloadError
(copyright info)
|
| |
|
|
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DownloadError
(copyright info)
|
| glam2 |
|
1056-1
(new)
|
|
1064
|
| gnumed-server |
|
|
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0v11.1
|
| |
|
|
|
Missing
(copyright info)
|
gwyddion
(gwyddion, gwyddion-common, gwyddion-plugins, libgwyddion2-0, libgwyddion20-dev, libgwyddion20-doc) |
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2.9-3
|
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2.18
|
hmmer
(hmmer, hmmer-doc, hmmer-pvm) |
|
|
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2.3.2
|
(libigraph-dev, libigraph0, libigraph0-dev) |
|
|
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0.5.2
|
(igstk-doc, igstk-examples, libigstk4, libigstk4-dev) |
|
|
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4.2
|
| imagej |
|
|
|
1.43k
|
infernal
(infernal, infernal-doc) |
|
0.81-1
(new)
|
|
1.0.2
|
insighttoolkit
(insighttoolkit3-examples, libinsighttoolkit3-dev, libinsighttoolkit3.16, python-insighttoolkit3, tcl8.4-insighttoolkit3) |
|
3.4.0-1
|
|
3.16.0
|
| |
|
2.03-1
|
|
Invalid
(copyright info)
|
| kradview |
|
|
|
1.1.0
|
| last-align |
|
|
|
87
|
| libace-perl |
|
|
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1.92
|
| |
|
|
|
Missing
(copyright info)
|
| libbio-graphics-perl |
|
|
|
1.992
|
| libbio-mage-perl |
|
|
|
20030502.3
|
libctapimkt
(libctapimkt-dev, libctapimkt0, libctapimkt0-dev) |
|
|
|
1.0.1
|
| libgo-perl |
|
|
|
0.10
|
| |
|
|
|
Invalid
(copyright info)
|
(loki, loki-doc) |
|
|
|
Missing
(copyright info)
|
| mafft |
|
6.240-1
|
|
6.716-without-extensions
|
| maq |
|
|
|
0.7.1
|
(martj, martj-doc) |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
| mauvealigner |
|
|
|
1.0.0
|
mcl
(mcl, mcl-doc) |
|
|
|
09-308
|
| med-doc |
|
|
|
Native
|
melting
(melting, melting-gui) |
|
4.2h-1
|
|
4.3c
|
| mencal |
|
|
|
2.3
|
minc
(libminc-dev, libminc2-1, minc-tools) |
|
2.0.14-2
|
|
2.0.18
|
| mipe |
|
|
|
1.1
|
| [non-free]
|
|
|
|
Missing
(copyright info)
|
| [non-free]
|
|
|
|
Invalid
(copyright info)
|
(mummer, mummer-doc) |
|
3.20-2
|
|
NotFound
(copyright info)
|
| murasaki |
|
|
|
1.51
|
(mustang, mustang-testdata) |
|
|
|
Invalid
(copyright info)
|
netepi-analysis
(netepi-analysis, netepi-analysis-web) |
|
|
|
0.8.1
|
| njplot |
|
2.2-1
|
|
2.3
|
(perlprimer, perlprimer-doc) |
|
1.1.14-1
|
|
NotFound
(copyright info)
|
phylip [non-free]
(phylip, phylip-doc) |
|
1:3.67-1
|
|
3.69
|
| |
|
|
|
20090706
|
pixelmed
(pixelmed-java) |
|
|
|
20091114
|
| plink |
|
|
|
1.07
|
| |
|
|
|
NotFound
(copyright info)
|
| |
|
|
|
Invalid
(copyright info)
|
| |
|
1.0-4
|
|
Invalid
(copyright info)
|
| pvrg-jpeg |
|
|
|
1.2.1
|
python-biopython
(${python:Provides}, python-biopython, python-biopython-doc, python-biopython-sql) |
|
1.44-3
|
|
1.52
|
raster3d [non-free]
(raster3d, raster3d-doc) |
|
|
|
2.7s
|
| |
|
2.1-1
|
|
Missing
(copyright info)
|
samtools
(libbam-dev, samtools) |
|
|
|
0.1.6
|
seqan
(seqan-apps, seqan-dev) |
|
|
|
1.2
|
sequenceconverter.app
(biococoa.app, sequenceconverter.app) |
|
|
|
1.6.0
|
| sibsim4 |
|
0.16-1
|
|
0.17
|
| sigma-align |
|
1.1.1-2
|
|
1.1.3
|
| sim4 |
|
0.0.20030921-2
|
|
0.0.20030921
|
| smile |
|
|
|
1.47
|
sofa-framework
(libsofa1, libsofa1-dev, sofa-apps, sofa-data, sofa-doc, sofa-tutorials) |
|
|
|
1.0-beta4
|
solvate [non-free]
(solvate, solvate-doc) |
|
|
|
1.0
|
(libsrf-dev, srf-doc) |
|
|
|
DownloadError
(copyright info)
|
ssake
(ssake, ssake-examples) |
|
|
|
3.4
|
(libstaden-read-dev, libstaden-read1, staden-io-lib-utils) |
|
|
|
DownloadError
(copyright info)
|
t-coffee
(t-coffee, t-coffee-doc, t-coffee-examples) |
|
5.31-1
|
|
8.14
|
tfbs
(libtfbs-perl) |
|
|
|
0.5.0
|
| theseus |
|
|
|
1.4.3
|
| tigr-glimmer |
|
|
|
302
|
| |
|
|
|
Missing
(copyright info)
|
(tree-ppuzzle, tree-puzzle, tree-puzzle-doc) |
|
|
|
Invalid
(copyright info)
|
| [non-free]
|
|
|
|
Missing
(copyright info)
|
| [contrib]
|
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
velvet
(velvet, velvet-example) |
|
|
|
0.7.55
|
vienna-rna [non-free]
(libvienna-rna-dev, libvienna0, vienna-rna) |
|
|
|
1.7
|
volpack
(libvolpack-dev, libvolpack1, libvolpack1-dev) |
|
1.0b3-2
|
|
1.0b3
|
(libvxl-dev, libvxl1-dev, libvxl1.13) |
|
|
|
NotFound
(copyright info)
|
wise
(wise, wise-doc) |
|
2.4.1-3
|
|
2.4.1
|
| Work in progress (25) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| agdbnet |
|
|
|
1.0.4
|
| |
|
|
|
Missing
(copyright info)
|
(bioimagesuite, bioimagesuite-data, libbioimagesuite2) |
|
|
|
Missing
(copyright info)
|
| [non-free]
|
|
0.2.2-1
|
|
NotFound
(copyright info)
|
ecell
(ecell, ecell-doc) |
|
|
|
3.1.106rc2
|
emboss-kaptain
(embassy-domainatrix-kaptain, emboss-kaptain) |
|
|
|
0.98
|
freediams
(freediams, freediams-data, freediams-doc) |
|
|
|
0.1.2.
|
gamgi
(gamgi, gamgi-dat, gamgi-doc) |
|
|
|
0.13.2
|
| gbrowse |
|
|
|
1.70
|
| |
|
|
|
Missing
(copyright info)
|
(${python:Provides}, gnumed-client, gnumed-client-de, gnumed-common, gnumed-doc) |
|
0.2.8.2-1
|
|
Invalid
(copyright info)
|
| haploview [contrib]
|
|
|
|
4.0
|
| libbio-mage-utils-perl |
|
|
|
20030502.0
|
libsbml
(${python:Provides}, libsbml-dev, libsbml-java, libsbml-perl, libsbml3, libsbml3-cil, libsbml3-dev, libsbml3-doc, libsbml3-examples, libsbml3-java, libsbml3-java-doc, libsbml3-octave, libsbml3-perl, libsbml3-perl-doc, libsbml3-ruby, libsbml3-ruby1.8, python-sbml, python-sbml3, python-sbml3-doc) |
|
|
|
4.1.0-b1
|
| mage2tab |
|
|
|
0.9
|
mira
(mira-assembler, mira-examples) |
|
|
|
3~rc2
|
| mlstdbnet |
|
|
|
2.0.2
|
(muscle, muscle-doc) |
|
3.70-1
|
|
NotFound
(copyright info)
|
| |
|
|
|
Invalid
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| [non-free]
|
|
|
|
Invalid
(copyright info)
|
| |
|
1-7
|
|
Missing
(copyright info)
|
swissknife
(libswiss-perl, swissknife) |
|
|
|
1.67
|
| |
|
|
|
DownloadError
(copyright info)
|
| tacg |
|
|
|
4.1.0
|
| With bugs (2) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| dialign |
|
2.2.1-1
|
|
2.2.1
|
emboss
(emboss, emboss-data, emboss-doc, emboss-lib, emboss-test, jemboss, libajax6, libajax6-dev, libnucleus6, libnucleus6-dev) |
|
5.0.0-4
|
|
6.1.0
|
Options
|
