Debian Med Project
Help us to see Debian used by medical practicioners and researchers! Join us on the Alioth page.
information
Developers please visit our
Wiki page
The Debian-Med project presents packages that are associated with
  • medicine
  • pre-clinical research
  • life science.
Its developments are mostly focused on three areas for the moment:
  • medical practice
  • imaging
  • bioinformatics
and can be installed directly from every Debian installation.
QA report
Newer upstream available (36)
Package Repository Archive Bugs Upstream
altree
(alphy, altree, altree-examples, libcutils-perl) 		1.0.1-5Charles Plessy <plessy@debian.org> — Tue, 27 Sep 2011 08:31:14 +0900 (1.1.0-1)Andreas Tille <tille@debian.org> — Tue, 22 Feb 2011 17:44:12 +0100 1.0.1-5
1
#578550 altree: FTBFS with perl 5.12.0-1: long doubles
1.1.1
biococoa
(libbiococoa-dev, libbiococoa2) 		2.2.2-1Andreas Tille <tille@debian.org> — Thu, 25 Nov 2010 15:46:38 +0100 2.2.2-1 demos-1.0.0
bioperl-run
(bioperl-run, libbio-perl-run-perl) 		1.6.9-1Charles Plessy <plessy@debian.org> — Sat, 18 Jun 2011 13:21:36 +0900 1.6.9-1 1.006900
bioruby
(libbio-ruby, libbio-ruby1.8) 		1.4.1-1Andreas Tille <tille@debian.org> — Thu, 25 Nov 2010 16:04:31 +0100 1.4.1-1 1.4.2
cain
(cain, cain-common, python-cain) 		1.6-1Ivo Maintz <ivo@maintz.de> — Mon, 07 Feb 2011 12:18:23 +0100 (1.9-1)Ivo Maintz <ivo@maintz.de> — Wed, 28 Sep 2011 12:02:11 +0200 1_9
cluster3 [non-free] 1.40-1Charles Plessy <plessy@debian.org> — Fri, 01 Aug 2008 13:29:25 +0900 1.50
ctn
(ctn-dev) 		3.0.6-13Thijs Kinkhorst <thijs@debian.org> — Fri, 25 Jul 2008 18:03:57 +0200 (3.2.0-1)Mathieu Malaterre <mathieu.malaterre@gmail.com> — Sun, 28 Dec 2008 12:26:16 +0100 3.0.6-13 3.2.0
denoiser 0.9.1-1Andreas Tille <tille@debian.org> — Wed, 04 May 2011 15:40:16 +0200 0.9.1-1 (experimental) 0.851
edfbrowser 1.38-1Andreas Tille <tille@debian.org> — Mon, 29 Aug 2011 19:27:10 +0200 1.38-1 1.39
elastix
(elastix, elastix-doc) 		4.4-2Steve M. Robbins <smr@debian.org> — Mon, 21 Feb 2011 10:30:55 -0600 4.4-2 4.5
ginkgocadx 2.5.4.0~rc-1Andreas Tille <tille@debian.org> — Fri, 09 Sep 2011 08:39:26 +0200 (2.5.4.1-1)Mathieu Malaterre <mathieu.malaterre@gmail.com> — Thu, 06 Oct 2011 15:28:35 +0200 2.5.4.0~rc-1
1
#644513
upstream
ginkgocadx: new upstream available
2.5.4.1
gofigure2
(gofigure2, libgofigure-dev, libgofigure0) 		0.8.2-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 29 Aug 2011 15:20:21 +0200 (0.8.2-2)Mathieu Malaterre <mathieu.malaterre@gmail.com> — Thu, 08 Sep 2011 15:56:41 +0200 0.8.2-1 0.8.3
imagej 1.45k-1Andreas Tille <tille@debian.org> — Tue, 19 Jul 2011 14:43:06 +0200 1.45k-1
1
#622345 imagej: fails just after the invocation
1.45q
jam-lib
(libjam-java, libjam-java-doc) 		0.0.r297-1Andreas Tille <tille@debian.org> — Thu, 10 Feb 2011 10:26:38 +0100 0.0.r297-1 299
jebl2
(libjebl2-java, libjebl2-java-doc) 		0.0.r6-1Andreas Tille <tille@debian.org> — Thu, 10 Feb 2011 10:26:38 +0100 0.0.r6-1 7
libgenome
(libgenome-1.3-0, libgenome-1.3-0-dev, libgenome-1.3-dev) 		1.3.1-3Andreas Tille <tille@debian.org> — Thu, 29 Apr 2010 11:21:22 +0200 1.3.1-3 2.2.0
libmems
(libmems-1.6-1, libmems-1.6-1-dev, libmems-1.6-dev) 		1.6.0-1Andreas Tille <tille@debian.org> — Thu, 28 Feb 2008 20:13:45 +0100 2.2.0
libsbml
(${python:Provides}, libsbml, libsbml-cil, libsbml-dbg, libsbml-dev, libsbml-java, libsbml-matlab, libsbml-octave, libsbml-perl, libsbml-python, libsbml-ruby, libsbml5, libsbml5-cil, libsbml5-cil-doc, libsbml5-dbg, libsbml5-dev, libsbml5-doc, libsbml5-examples, libsbml5-java, libsbml5-java-doc, libsbml5-matlab, libsbml5-matlab-doc, libsbml5-octave, libsbml5-octave-doc, libsbml5-perl, libsbml5-perl-doc, libsbml5-python, libsbml5-python-doc, libsbml5-ruby1.8, python-sbml) 		5.1.0~b0-1Ivo Maintz <ivo@maintz.de> — Mon, 19 Sep 2011 15:33:42 +0200 5.1.0-b0
libswarm
(libswarm-dev, libswarm2) 		2.3.0-1Scott Christley <schristley@mac.com> — Fri, 06 Nov 2009 15:42:52 -0800 2.4.1
mafft 6.860-1Charles Plessy <plessy@debian.org> — Sun, 18 Sep 2011 14:43:10 +0900 6.860-1 6.861
meme [non-free]
(glam2, meme) 		4.5.0-1Andreas Tille <tille@debian.org> — Thu, 27 Jan 2011 17:42:05 +0100 4.7.0
microbiomeutil
(chimeraslayer, microbiomeutil, microbiomeutil-data, nast-ier, wigeon) 		2010-11-1Steffen Moeller <moeller@debian.org> — Wed, 30 Mar 2011 00:23:15 +0200 20101212
mothur 1.18.1-1Andreas Tille <tille@debian.org> — Tue, 26 Apr 2011 19:58:45 +0200 1.18.1-1 1.21.1
murasaki 1.51-1Andreas Tille <tille@debian.org> — Fri, 09 Jul 2010 20:57:29 +0200 1.68.6
netepi-analysis
(netepi-analysis, netepi-analysis-web) 		0.8.1-1Andreas Tille <tille@debian.org> — Thu, 16 Jun 2005 12:01:09 +0200 0.9.0
netepi-collection 1.1.0-1Andreas Tille <tille@debian.org> — Thu, 8 Mar 2007 23:01:39 +0100 1.6.0
openmrs 1.6.1-1Misha Koshelev <misha680@gmail.com> — Tue, 05 Oct 2010 19:24:01 -0500 1.8.2
openslide-java
(libopenslide-java) 		0.9.2-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Thu, 01 Sep 2011 17:18:40 +0200 0.9.2.0.9.2..
paml4.4e-1 > 4.4c-3 [non-free]
(paml, paml-doc) 		4.4c-3Steffen Moeller <moeller@debian.org> — Sat, 01 Jan 2011 13:56:50 +0100 (4.4e-2)Pjotr Prins <pjotr.debian@thebird.nl> — Tue, 04 Oct 2011 11:17:09 +0200 4.4e-1 4.4e
pdb2pqr
(pdb2pqr, pdb2pqr-doc, propka) 		1.7-2Manuel Prinz <manuel@debian.org> — Wed, 31 Aug 2011 00:22:15 +0200 1.7-2 1.7.1a
phyml 2:20110526-1Charles Plessy <plessy@debian.org> — Sun, 26 Jun 2011 12:14:54 +0900 2:20110526-1 20110919
pixelmed
(pixelmed-java) 		20110901-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Tue, 20 Sep 2011 21:13:59 +0200 20110901-1 20110928
python-biopython
(${python:Provides}, python-biopython, python-biopython-doc, python-biopython-sql) 		1.57-1Philipp Benner <philipp@debian.org> — Sun, 10 Apr 2011 17:58:01 +0000 1.57-1 1.58
qiime1.3.0-1 > 1.2.1-6
(denoiser, qiime, qiime-denoiser) 		1.2.1-6Steffen Moeller <moeller@debian.org> — Fri, 29 Apr 2011 22:56:37 +0200 (1.3.0-1)Andreas Tille <tille@debian.org> — Wed, 03 Aug 2011 10:59:42 +0200 1.3.0-1 1.3.0
staden-io-lib
(libstaden-read-dev, libstaden-read1, staden-io-lib-utils) 		1.12.4-1Charles Plessy <plessy@debian.org> — Tue, 27 Jul 2010 21:07:57 +0900 1.12.4-1 1.12.5
vista
(libvista-2-1, libvista-2-dev, vista-tools) 		2.1.7-1Andreas Tille <tille@debian.org> — Thu, 31 Jan 2008 18:07:28 +0100 2.2.1
Ready for upload (51)
Package Repository Archive Bugs Upstream
anfo 0.98-1Tim Booth <tbooth@ceh.ac.uk> — Thu, 11 Aug 2011 10:10:31 +0100 0.98
axpcoordsWatch problem: Missing 1.0-1David Paleino <d.paleino@gmail.com> — Wed, 06 Feb 2008 09:29:46 +0100 Missing (copyright info)
bio-formatsWatch problem: Invalid
(libbio-formats-java, libbio-formats-java-doc) 		4.3.1-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Wed, 07 Sep 2011 17:46:40 +0200 Invalid (copyright info)
biomodeWatch problem: Missing 1.002-8Andreas Tille <tille@debian.org> — Thu, 08 May 2008 09:25:38 +0200 1.002-7 (oldstable) Missing (copyright info)
btk-core
(libbtk-core-dev) 		0.8.1-1Morten Kjeldgaard <mok@bioxray.dk> — Tue, 08 Jan 2008 15:22:01 +0100 0.8.1
cdbfastaWatch problem: Invalid 0.981-20100722-1Andreas Tille <tille@debian.org> — Thu, 14 Apr 2011 21:58:32 +0200 Invalid (copyright info)
cinema 3.0.23-1Steffen Moeller <moeller@debian.org> — Tue, 07 Jun 2011 18:40:09 +0200 3.0.23
dazzle 1.01-1Steffen Moeller <moeller@pzr.uni-rostock.de> — Mon, 24 Jan 2005 00:48:09 +0100 (1.01-2)David Paleino <d.paleino@gmail.com> — Wed, 16 Apr 2008 22:38:37 +0200 1.01
euler-srWatch problem: Missing 0.0.20081211-1Andreas Tille <tille@debian.org> — Tue, 09 Dec 2008 07:40:11 +0100 Missing (copyright info)
euler2Watch problem: Missing 2.0-1Andreas Tille <tille@debian.org> — Tue, 09 Dec 2008 07:40:11 +0100 Missing (copyright info)
fact++Watch problem: NotFound 1.1.8-1Steffen Moeller <moeller@debian.org> — Sun, 12 Aug 2007 23:35:37 +0200 (1.1.11-1)David Paleino <d.paleino@gmail.com> — Wed, 16 Apr 2008 23:33:24 +0200 NotFound (copyright info)
freediamsWatch problem: InvalidVersion
(freediams, freediams-data, freediams-doc, freediams-doc-en, freediams-doc-fr) 		0.5.9~alpha-1Eric Maeker <eric.maeker@gmail.com> — Fri, 29 Apr 2011 15:06:00 +0100 0.5.4-1 InvalidVersion (copyright info)
freeicdWatch problem: InvalidVersion
(freeicd, freeicd-data, freeicd-doc, freeicd-doc-en, freeicd-doc-fr) 		0.1.0~beta-1Eric Maeker, MD <eric.maeker@gmail.com> — Mon, 19 Nov 2010 09:03:40 +0200 InvalidVersion (copyright info)
groguiWatch problem: Missing 0.5.2-1Steffen Moeller <moeller@debian.org> — Sun, 23 Nov 2008 23:38:26 +0100 Missing (copyright info)
insightapplicationsWatch problem: Missing 3.20.0-1Steve M. Robbins <smr@debian.org> — Fri, 01 Oct 2010 20:45:38 -0500 Missing (copyright info)
invesaliusWatch problem: NotFound 3.0.0.b1-1InVesalius <invesalius@cti.gov.br> — Tue, 26 Jan 2010 22:45:46 -0200 (3.0.0.b1-2)Andreas Tille <tille@debian.org> — Tue, 23 Feb 2010 08:41:24 +0100 NotFound (copyright info)
jai-coreWatch problem: Missing [non-free]
(libjai-core-java, libjai-core-java-doc) 		1.1.4-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 12 Sep 2011 09:56:16 +0200 Missing (copyright info)
jai-imageio-coreWatch problem: Missing [non-free]
(libjai-imageio-core-java, libjai-imageio-core-java-doc) 		1.2-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 12 Sep 2011 09:56:16 +0200 Missing (copyright info)
jbrowseWatch problem: Missing 1.2.1-1Steffen Moeller <moeller@debian.org> — Thu, 14 Jul 2011 18:38:37 +0200 Missing (copyright info)
kempbasuWatch problem: NotFound 0.9.1-1Charles Plessy <plessy@debian.org> — Tue, 27 Jan 2009 18:59:06 +0900 NotFound (copyright info)
kradview 1.1.0-1Andreas Tille <tille@debian.org> — Mon, 27 Oct 2008 21:55:08 +0100 1.1.0
libbio-das-perlWatch problem: Missing 0.94-1Steffen Moeller <moeller@pzr.uni-rostock.de> — Tue, 25 Jan 2005 00:20:14 +0100 Missing (copyright info)
martjWatch problem: Missing
(martj, martj-doc) 		0.1-1Steffen Möller <moeller@pzr.uni-rostock.de> — Fri, 7 Jan 2005 23:58:01 +0100 Missing (copyright info)
mauvealigner 1.0.0-1Andreas Tille <tille@debian.org> — Thu, 13 Mar 2008 15:16:59 +0100 1.0.0
mayamWatch problem: InvalidVersion 0.8-1Andreas Tille <tille@debian.org> — Thu, 17 Mar 2011 19:24:30 +0100 InvalidVersion (copyright info)
medical 1.0.1-1Andreas Tille <tille@debian.org> — Thu, 07 Apr 2011 16:53:45 +0200 1.0.1
mosaik-aligner 1.1.0021-1Andreas Tille <tille@debian.org> — Thu, 03 Feb 2011 14:10:47 +0100 1.1.0021
mummyWatch problem: Missing
(libkitware-mummy-runtime1.0-cil, mummy, mummy-doc) 		1.0.2-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Wed, 16 Feb 2011 16:35:52 +0100 Missing (copyright info)
ncbi-tools-cxxWatch problem: Missing 20100615-1Steffen Moeller <moeller@debian.org> — Thu, 02 Dec 2010 10:17:03 +0100 Missing (copyright info)
netcdf-javaWatch problem: Missing
(libnetcdf-java) 		4.2-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 12 Sep 2011 09:56:16 +0200 Missing (copyright info)
openslide-python
(${python:Provides}, python-openslide) 		0.2.0-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Thu, 01 Sep 2011 17:18:40 +0200 0.2.0
patristicWatch problem: Missing 0.0.20100817-1Andreas Tille <tille@debian.org> — Sun, 13 Feb 2011 12:53:06 +0100 Missing (copyright info)
plastimatch 1.5.4+dfsg0-1Gregory C. Sharp <gregsharp.geo@yahoo.com> — Sun, 09 Oct 2011 20:41:35 -0400 1.5.3.dfsg0-1 (experimental) 1.5.4
primer3plusWatch problem: Invalid 1.0.0-1Charles Plessy <plessy@debian.org> — Fri, 12 Sep 2008 17:29:36 +0900 Invalid (copyright info)
prottest3.0b-20101222 > 3.0-src 3.0b-20101222-1Andreas Tille <tille@debian.org> — Wed, 02 Feb 2011 15:45:54 +0100 3.0-src
pynast
(pynast, python-pynast) 		1.1-3Steffen Moeller <moeller@debian.org> — Fri, 26 Aug 2011 14:50:33 +0200 (1.1-4)Steffen Moeller <moeller@debian.org> — Fri, 26 Aug 2011 14:50:33 +0200 1.1
qtlreaper
(python-reaper) 		1.1.1-1Steffen Moeller <moeller@debian.org> — Thu, 07 Jul 2011 00:03:09 +0200 1.1.1
seq-gen 1.3.2-1.1Alexandre Mestiashvili <alex@biotec.tu-dresden.de> — Wed, 05 Oct 2011 13:21:49 +0000 1.3.2-1 1.3.2
sequenceconverter.app
(biococoa.app, sequenceconverter.app) 		1.6.0-8Charles Plessy <plessy@debian.org> — Thu, 07 Aug 2008 23:23:14 +0900 (1.6.0-9)Andreas Tille <tille@debian.org> — Tue, 31 Mar 2009 09:11:58 +0200 1.6.0
shimWatch problem: Missing 0.1.1-1Jeff Buchbinder <jeff@freemedsoftware.org> — Wed, 20 Apr 2011 10:02:58 -0400 Missing (copyright info)
solvateWatch problem: NotFound [non-free]
(solvate, solvate-doc) 		1.0-1Steffen Moeller <moeller@debian.org> — Fri, 28 Dec 2007 01:45:03 +0100 (1.0-2)Charles Plessy <charles-debian-nospam@plessy.org> — Sat, 22 Mar 2008 11:32:31 +0900 NotFound (copyright info)
transtermhpWatch problem: Invalid 2.09-1Alex Mestiashvili <alex@biotec.tu-dresden.de> — Tue, 01 Mar 2011 12:24:47 +0000 2.07-1 Invalid (copyright info)
treeplotWatch problem: NotFound 0.7-1.2Vincent Danjean <Vincent.Danjean@ens-lyon.org> — Thu, 2 Feb 2006 22:21:26 +0100 (0.7.2-1) Olivier Langella <Olivier.Langella@moulon.inra.fr> — Sat, 06 Jun 2008 12:02:38 +0200 NotFound (copyright info)
treeviewWatch problem: Missing [contrib] 1.0.10-1Steffen Moeller <moeller@pzr.uni-rostock.de> — Thu, 6 Jan 2005 02:14:07 +0200 Missing (copyright info)
treevolveWatch problem: Missing 1.3.2-2Vincent Danjean <Vincent.Danjean@ens-lyon.org> — Fri, 21 Jan 2005 16:44:14 +0100 (1.3.2-3)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 17:01:53 +0900 Missing (copyright info)
uw-prismWatch problem: NotFound 1.5.1-1Thorsten Alteholz <debian@alteholz.de> — Thu, 14 Jul 2011 18:15:53 +0200 NotFound (copyright info)
vienna-rna
(vienna-rna, vienna-rna-doc) 		1.8.5-1Alex Mestiashvili <alex@biotec.tu-dresden.de> — Sat, 16 Apr 2011 09:20:56 +0000 1.8.5
visadWatch problem: Missing
(libvisad-java) 		2.0-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 12 Sep 2011 09:56:16 +0200 Missing (copyright info)
volviewWatch problem: NotFound 3.4-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Fri, 02 Sep 2011 18:01:20 +0200 NotFound (copyright info)
vtkedgeWatch problem: Missing
(libvtkedge, libvtkedge-dev) 		0.2.0~20110819-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Fri, 19 Aug 2011 17:12:42 +0200 0.2.0~20110403-1
3
#634739
pending
libvtkedge: Wrong license in description
#640488 build dependencies cannot be fulfilled
#632861
pending, patch
libvtkedge-dev: package needs template (*.txx) files
Missing (copyright info)
zodiac-zeden 0.6.5-1Alex Mestiashvili <alex@biotec.tu-dresden.de> — Tue, 15 Feb 2011 09:56:24 +0000 0.6.5
NEW and incoming (1)
Package Repository Archive Bugs Upstream
gdcm
(${python:Provides}, libgdcm-cil, libgdcm-java, libgdcm-tools, libgdcm2-dev, libgdcm2.0, libgdcm2.0-dbg, libvtkgdcm-cil, libvtkgdcm-java, libvtkgdcm-tools, libvtkgdcm2-dev, libvtkgdcm2.0, python-gdcm, python-vtkgdcm) 		2.0.18-5Mathieu Malaterre <mathieu.malaterre@gmail.com> — Mon, 10 Oct 2011 15:38:45 +0200 2.0.18-5 (incoming)
1
#531181 libgdcm-cil: GDCM is packaged in an API unstable way
2.0.18
Packages with strange versions in the repository (9)
Package Repository Archive Bugs Upstream
abacas1.3.1 > 1.03 1.3.1-1Andreas Tille <tille@debian.org> — Mon, 21 Mar 2011 09:48:04 +0100 1.3.1-1 1.03
embassy-phylip3.69+20100721 > 3.69 [non-free] 3.69+20100721-3Charles Plessy <plessy@debian.org> — Thu, 12 May 2011 14:19:59 +0900 3.69+20100721-3 3.69
gentle1.9+cvs20100605+dfsg-3 > 1.9+cvs20100605+dfsg-2, Watch problem: Missing [contrib] 1.9+cvs20100605+dfsg-2Steffen Moeller <moeller@debian.org> — Tue, 15 Jun 2010 16:38:33 +0200 1.9+cvs20100605+dfsg-3 Missing (copyright info)
igstk4.4.0-2 > 4.4.0-1, 4.4.0 > 4.4
(igstk-doc, igstk-examples, libigstk4, libigstk4-dbg, libigstk4-dev) 		4.4.0-1Dominique Belhachemi <domibel@debian.org> — Mon, 09 May 2011 12:28:32 -0400 4.4.0-2 4.4
libctapimkt1.0.1-1.1 > 1.0.1-1
(libctapimkt-dev, libctapimkt0, libctapimkt0-dev) 		1.0.1-1Andreas Tille <tille@debian.org> — Sat, 22 Mar 2008 13:41:13 +0100 1.0.1-1.1 1.0.1
mauve20090924-2 > 2.1.1-1, Watch problem: NotFound 2.1.1-1Andreas Tille <tille@debian.org> — Thu, 13 Mar 2008 15:16:59 +0100 20090924-2 NotFound (copyright info)
muscle3.70+fix1 > 3.8.31
(muscle, muscle-doc) 		3.70+fix1-2Charles Plessy <charles-debian-nospam@plessy.org> — Thu, 14 Feb 2008 10:44:17 +0900 (1:3.8.31-1)David Paleino <d.paleino@gmail.com> — Wed, 11 Jun 2008 16:23:28 +0200 3.70+fix1-2 3.8.31
srf0.1+dfsg > 0.1
(libsrf-dev, srf-doc) 		0.1+dfsg-1Charles Plessy <plessy@debian.org> — Tue, 25 Aug 2009 20:31:22 +0900 0.1+dfsg-1 0.1
treeviewx0.5.1+20100823 > 0.5 0.5.1+20100823-1Charles Plessy <plessy@debian.org> — Fri, 24 Jun 2011 08:34:48 +0900 0.5.1+20100823-1 0.5
Work in progress (65)
Package Repository Archive Bugs Upstream
adun.appWatch problem: Invalid 0.81-5Andreas Tille <tille@debian.org> — Tue, 28 Jun 2011 10:38:55 +0200 (0.81-6)Andreas Tille <tille@debian.org> — Tue, 28 Jun 2011 11:12:46 +0200 0.81-5 Invalid (copyright info)
agdbnet — (1.0.4-1)Andreas Tille <tille@debian.org> — Mon, 29 Sep 2008 13:30:39 +0200 1.0.4
alien-hunterWatch problem: NotFound 1.7-1Andreas Tille <tille@debian.org> — Wed, 14 Oct 2009 11:41:51 +0200 (1.7-1.1)Charles Plessy <plessy@debian.org> — Sun, 03 Jan 2010 23:32:58 +0900 1.7-1 NotFound (copyright info)
amap-alignWatch problem: Invalid 2.2-3Andreas Tille <tille@debian.org> — Mon, 02 May 2011 16:30:17 +0200 (2.2-4)Andreas Tille <tille@debian.org> — Mon, 02 May 2011 16:43:14 +0200 2.2-3 Invalid (copyright info)
axparafitWatch problem: Missing — (1.0-1)Andreas Tille <tille@debian.org> — Fri, 29 Apr 2011 09:13:49 +0200 Missing (copyright info)
bagphenotype — (0.20100316-1)Steffen Moeller <moeller@debian.org> — Mon, 02 Aug 2010 12:06:32 +0200 0.20100316
beast-mcmcWatch problem: Missing [non-free]
(beast-doc, beast-examples, beast-mcmc, beast-mcmc-lib) 		— (1.6.1+svnr3660-1)Andreas Tille <tille@debian.org> — Fri, 04 Feb 2011 19:39:04 +0100 Missing (copyright info)
bioimagesuiteWatch problem: Missing
(bioimagesuite, bioimagesuite-data, libbioimagesuite2) 		— (2.0-1)David Paleino <d.paleino@gmail.com> — Wed, 06 Feb 2008 13:11:50 +0100 Missing (copyright info)
blatWatch problem: Invalid [non-free] — (34-1)Charles Plessy <plessy@debian.org> — Thu, 09 Apr 2009 17:20:01 +0900 Invalid (copyright info)
charlsWatch problem: NotFound
(libcharls-dev, libcharls1) 		1.0-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Wed, 27 Apr 2011 18:26:56 +0200 1.0-1 NotFound (copyright info)
clustalw-mpiWatch problem: DownloadError [non-free] 0.15-1Charles Plessy <plessy@debian.org> — Sat, 05 Jul 2008 17:22:23 +0900 (0.15-2)Andreas Tille <tille@debian.org> — Thu, 04 Jun 2009 09:38:51 +0200 0.15-1 DownloadError (copyright info)
coilsWatch problem: Missing
(ncoils) 		2002-2Andreas Tille <tille@debian.org> — Mon, 24 Jan 2011 14:29:17 +0100 2002-2 Missing (copyright info)
ctn-docWatch problem: Missing 3.0.6-3Thijs Kinkhorst <thijs@debian.org> — Fri, 25 Jul 2008 18:22:27 +0200 3.0.6-3 Missing (copyright info)
dcm4che
(libdcm4che-java, libdcm4che-java-doc) 		— (2.0.25-1)Andreas Tille <tille@debian.org> — Wed, 20 Apr 2011 08:56:57 +0200 2.0.25
dialign-tWatch problem: Invalid
(dialign-t, dialign-t-doc, dialign-tx, dialign-tx-data) 		1.0.2-2Andreas Tille <tille@debian.org> — Fri, 14 Jan 2011 15:20:54 +0100 1.0.2-2 Invalid (copyright info)
doturWatch problem: NotFound 1.53-1Thorsten Alteholz <debian@alteholz.de> — Fri, 03 Jun 2011 16:00:00 +0200 1.53-1 NotFound (copyright info)
ecell
(ecell, ecell-doc) 		— (3.1.100-2)Steffen Moeller <moeller@pzr.uni-rostock.de> — Wed, 10 Mar 2004 22:08:00 +0100 3.2.2
eigensoftWatch problem: NotFound [non-free]
(eigensoft, eigensoft-dbg) 		— (4.2-1)Steffen Moeller <moeller@debian.org> — Thu, 15 Sep 2011 14:20:03 +0200 NotFound (copyright info)
emboss-kaptainWatch problem: DownloadError
(embassy-domainatrix-kaptain, emboss-kaptain) 		— (0.98-1)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 16:59:57 +0900 DownloadError (copyright info)
epigrassWatch problem: Invalid
(epigrass, epigrass-doc) 		2.0.4-1Andreas Tille <tille@debian.org> — Tue, 23 Nov 2010 11:55:45 +0100 2.0.4-1
2
#640098 epigrass: missing dependency on python-pkg-resources
#640005 there is no icon for epigrass in GNOME -> applications -> science
Invalid (copyright info)
fastdnamlWatch problem: Missing 1.2.2-9Andreas Tille <tille@debian.org> — Fri, 04 Sep 2009 13:14:01 +0200 1.2.2-9
1
#639996 fastdnaml is not able to start in GNOME
Missing (copyright info)
fastlinkWatch problem: Missing
(fastlink, fastlink-doc) 		4.1P-fix95-2Andreas Tille <tille@debian.org> — Fri, 14 Jan 2011 08:40:14 +0100 4.1P-fix95-2
1
#639998 fastlink: the subprograms ilink, linkmap, loadscore, mlink and unknown are not startable
Missing (copyright info)
fasttreeWatch problem: Missing — (2.1.0.c-1)Steffen Moeller <moeller@debian.org> — Wed, 02 Mar 2011 18:52:56 +0100 Missing (copyright info)
freemedforms
(freemedforms, freemedforms-data, freemedforms-doc) 		— (0.5.9~alpha2-1)Eric Maeker <eric.maeker@gmail.com> — Tue, 15 Jun 2011 12:00:00 +0100 0.5.9%257Ealpha1
gamgi
(gamgi, gamgi-dat, gamgi-doc) 		— (0.13.1-1)Steffen Moeller <moeller@debian.org> — Fri, 15 Feb 2008 19:45:31 +0100 0.15.3-1 0.15.5-exp
gbrowse-karyotypeWatch problem: Missing — (cvs20071113-1)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 17:02:15 +0900 Missing (copyright info)
gff2aplotWatch problem: DownloadError 2.0-6Andreas Tille <tille@debian.org> — Tue, 25 Jan 2011 13:32:41 +0100 2.0-6 DownloadError (copyright info)
gff2psWatch problem: DownloadError 0.98d-3Nelson A. de Oliveira <naoliv@debian.org> — Sun, 24 Feb 2008 00:18:36 -0300 (0.98d-4)Nelson A. de Oliveira <naoliv@debian.org> — Thu, 29 May 2008 00:48:41 -0300 0.98d-3 DownloadError (copyright info)
glam2Watch problem: NotFound 1064-2Charles Plessy <plessy@debian.org> — Tue, 21 Apr 2009 21:49:54 +0900 (1064-3)Charles Plessy <plessy@debian.org> — Sun, 03 Jan 2010 22:06:20 +0900 1064-1 NotFound (copyright info)
gnumed-clientWatch problem: Invalid
(${python:Provides}, gnumed-client, gnumed-client-de, gnumed-common, gnumed-doc) 		0.9.10-2Andreas Tille <tille@debian.org> — Fri, 09 Sep 2011 14:57:28 +0200 0.9.10-2 Invalid (copyright info)
gnumed-serverWatch problem: Invalid 15.10-1Andreas Tille <tille@debian.org> — Fri, 09 Sep 2011 13:09:41 +0200 15.10-1 Invalid (copyright info)
haploview [contrib] — (4.0-1)Steffen Moeller <moeller@debian.org> — Sun, 14 Jan 2007 15:28:10 +0100 4.1
kalignWatch problem: Invalid 1:2.03+20110620-1Charles Plessy <plessy@debian.org> — Sat, 25 Jun 2011 17:23:01 +0900 1:2.03+20110620-1 Invalid (copyright info)
libtfbs-perlWatch problem: Invalid 0.5.svn.20100421-1Charles Plessy <plessy@debian.org> — Thu, 25 Aug 2011 13:10:21 +0900 0.5.svn.20100421-1 Invalid (copyright info)
lokiWatch problem: Missing
(loki, loki-doc) 		2.4.7.4-4Andreas Tille <tille@debian.org> — Tue, 25 Mar 2008 15:14:26 +0100 2.4.7.4-4 Missing (copyright info)
mage2tab — (0.9-1)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 17:02:06 +0900 0.9
mencalWatch problem: NotFound 2.3-9Charles Plessy <plessy@debian.org> — Sun, 07 Mar 2010 23:46:45 +0900 (2.3-10)Andreas Tille <tille@debian.org> — Mon, 06 Dec 2010 12:26:03 +0100 2.3-9
1
#607008 mencal: with l10n, calendar header formatting not aligned with column content
NotFound (copyright info)
mlstdbnetWatch problem: DownloadError — (2.0.2-1)Andreas Tille <tille@debian.org> — Tue, 13 Jan 2009 11:48:08 +0100 DownloadError (copyright info)
molphyWatch problem: Missing [non-free] 2.3b3-5Andreas Tille <tille@debian.org> — Mon, 16 Jun 2008 11:31:02 +0200 2.3b3-5
1
#642016 some functions return values implicitly converted to pointer
Missing (copyright info)
mriconvertWatch problem: NotFound 2.0.217-3Steve M. Robbins <smr@debian.org> — Fri, 07 Oct 2011 07:32:29 -0500 2.0.217-3
1
#617342 mriconvert: MRIConvert does not support 32 bits
NotFound (copyright info)
mssstestWatch problem: Invalid [non-free] 3.0-2Andreas Tille <tille@debian.org> — Tue, 06 Oct 2009 14:47:59 +0200 3.0-2
1
#450107 mssstest: debian/watch fails to report upstream's version
Invalid (copyright info)
mustangWatch problem: Invalid
(mustang, mustang-testdata) 		3.2.1-1Andreas Tille <tille@debian.org> — Wed, 28 Oct 2009 19:59:33 +0100 (3.2.1-2)Charles Plessy <plessy@debian.org> — Sun, 03 Jan 2010 23:06:35 +0900 3.2.1-1 Invalid (copyright info)
pal2nalWatch problem: Missing — (13-1)Steffen Moeller <moeller@debian.org> — Tue, 23 Nov 2010 16:18:36 +0100 Missing (copyright info)
patmanWatch problem: Invalid — (1.2-1)Charles Plessy <plessy@debian.org> — Thu, 22 May 2008 07:36:37 +0900 Invalid (copyright info)
pcalendarWatch problem: Missing 3.2.0-1Miriam Ruiz <little_miry@yahoo.es> — Thu, 29 Sep 2011 01:55:23 +0200 (3.2.0-2)Miriam Ruiz <little_miry@yahoo.es> — Tue, 04 Oct 2011 01:23:13 +0200 3.2.0-1 Missing (copyright info)
phylographerWatch problem: Missing — (20030403-1)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 17:02:59 +0900 Missing (copyright info)
plasmidomicsWatch problem: NotFound 0.2.0-2Andreas Tille <tille@debian.org> — Tue, 18 Mar 2008 11:45:03 +0100 (0.2.0-3)Charles Plessy <plessy@debian.org> — Fri, 29 Aug 2008 14:04:36 +0900 0.2.0-2 NotFound (copyright info)
platoWatch problem: DownloadError
(plato, plato-dbg) 		— (1.1-1)Steffen Moeller <moeller@debian.org> — Wed, 14 Sep 2011 14:47:35 +0200 DownloadError (copyright info)
prank [non-free] — (100802-1)Manuel Prinz <manuel@debian.org> — Fri, 20 May 2011 11:58:29 +0200 100802
prodaWatch problem: Invalid 1.0-7Charles Plessy <plessy@debian.org> — Fri, 04 Jul 2008 12:43:43 +0900 (1.0-8)Charles Plessy <plessy@debian.org> — Sun, 03 Jan 2010 19:15:57 +0900 1.0-7 Invalid (copyright info)
raccoonWatch problem: DownloadError [contrib] 1.0-1Steffen Moeller <moeller@debian.org> — Sun, 19 Jun 2011 13:20:27 +0200 1.0-1 DownloadError (copyright info)
rdp-classifier — (2.0.1-1)Steffen Moeller <moeller@debian.org> — Wed, 02 Mar 2011 23:24:15 +0100 2.3
readseqWatch problem: Missing 1-8Andreas Tille <tille@debian.org> — Thu, 26 Nov 2009 12:31:49 +0100 (1-9)Andreas Tille <tille@debian.org> — Sat, 07 Aug 2010 19:30:43 +0200 1-8 Missing (copyright info)
resmed-docWatch problem: Missing — 20020327-2 (stable) Missing (copyright info)
rnahybridWatch problem: Missing 2.1-2Andreas Tille <tille@debian.org> — Mon, 01 Jun 2009 23:01:47 +0200 (2.1-3)Charles Plessy <plessy@debian.org> — Sun, 03 Jan 2010 19:56:59 +0900 2.1-2 Missing (copyright info)
rosettaWatch problem: Missing [non-free]
(rosetta, rosetta-dbg) 		— (3.3-1)Steffen Moeller <moeller@debian.org> — Mon, 01 Aug 2011 15:15:33 +0200 Missing (copyright info)
swissknife
(libswiss-perl, swissknife) 		— (1.67-1)Steffen Moeller <moeller@debian.org> — Mon, 16 Nov 2009 10:18:32 +0100 1.67-1 1.67
tab2mage — (20080428-1)David Paleino <d.paleino@gmail.com> — Sat, 31 May 2008 19:39:45 +0200 20080626
tacg — (4.3-1)Charles Plessy <plessy@debian.org> — Sun, 27 Apr 2008 17:00:27 +0900 4.1.0
tm-alignWatch problem: NotFound 20110130-2Steffen Moeller <moeller@debian.org> — Sat, 05 Feb 2011 12:43:32 +0100 (20110130-3)Andreas Tille <tille@debian.org> — Mon, 07 Feb 2011 16:15:01 +0100 20110130-2 NotFound (copyright info)
toothchart — (0.02.0-1)Thorsten Alteholz <debian@alteholz.de> — Wed, 06 Jul 2011 18:33:16 +0200 0.02.0
tree-puzzleWatch problem: Invalid
(tree-ppuzzle, tree-puzzle, tree-puzzle-doc) 		5.2-6Andreas Tille <tille@debian.org> — Tue, 10 Nov 2009 07:49:48 +0100 5.2-6
1
#640003 tree-puzzle is not able to start in GNOME
Invalid (copyright info)
vcftoolsWatch problem: NotFound 0.1.6-1Thorsten Alteholz <debian@alteholz.de> — Sun, 10 Jul 2011 15:18:25 +0200 0.1.6-1 NotFound (copyright info)
vmdWatch problem: Missing [non-free] — (1.9~beta2-1)Steffen Moeller <moeller@debian.org> — Sat, 05 Mar 2011 14:27:03 +0100 Missing (copyright info)
wgs-assemblerWatch problem: NotFound — (6.1-1)William Spooner <whs@eaglegenomics.com> — Sat, 29 Jan 2011 16:40:00 +0000 NotFound (copyright info)
With bugs (17)
Package Repository Archive Bugs Upstream
aeskulap 0.2.2b1-8Mathieu Malaterre <mathieu.malaterre@gmail.com> — Wed, 20 Apr 2011 18:28:34 +0200 0.2.2b1-8
1
#607535
patch
[aeskulap] FTBFS with linker flag --as-needed
0.2.2b1
arb [non-free]
(arb, arb-common, arb-doc, libarb) 		5.2-1Andreas Tille <tille@debian.org> — Wed, 09 Feb 2011 16:56:15 +0100 (5.2-2)Nelson A. de Oliveira <naoliv@debian.org> — Thu, 21 Jul 2011 13:03:55 -0300 5.2-1
3
#634999
pending
ftbfs
#632206
l10n
Updated po file into Catalan translation for the package arb
#623638 arb: is the libxp dependency necessary?
5.2
dcmtk
(dcmtk, dcmtk-doc, dcmtk-www, libdcmtk2, libdcmtk2-dev) 		3.6.0-8Mathieu Malaterre <mathieu.malaterre@gmail.com> — Tue, 19 Jul 2011 17:08:19 +0200 3.6.0-8
3
#628153 dcmtk: Please make individual libraries self-contained (no unresolved symbols)
#510120 dcmtk: Missing link to libxml2 (libdcmsr)
#637687 libdcmtk2-dev: Dcmtk headers cause compile failure
3.6.0
dicom3tools 1.0~20110918-1Mathieu Malaterre <mathieu.malaterre@gmail.com> — Fri, 23 Sep 2011 08:33:19 +0200 1.0~20110918-1
3
#640914 dcap and dicom3tools: error when trying to install together
#631101
upstream
dicom3tools: dcdump stops on extra 0,0 tag
#559313 dicom3tools: dciodvfy aborts on valid RT Dose Storage file
1.0~20110918
emboss-explorer
(emboss-explorer, libemboss-acd-perl) 		2.2.0-7Charles Plessy <plessy@debian.org> — Sun, 07 Dec 2008 20:21:35 +0900 (2.2.0-8)David Paleino <d.paleino@gmail.com> — Sat, 23 May 2009 14:43:42 +0200 2.2.0-7
1
#485735 Can not serve images of help pages to other computers.
2.2.0
figtree 1.3.1-1Andreas Tille <tille@debian.org> — Mon, 21 Feb 2011 08:17:38 +0100 1.3.1-1
1
#625562
upstream
figtree: fails to start
1.3.1
gdpc
(gdpc, gdpc-examples) 		2.2.5-1Andreas Tille <tille@debian.org> — Sun, 04 Oct 2009 09:59:31 +0200 2.2.5-1
2
#640008 there is no icon for gdpc 2.2.5-1 from sid in GNOME->applications->science
#642094
patch
gdpc: uses functions deprecated in current GDK but builds with -DGDK_DISABLE_DEPRECATED
2.2.5
igraph
(libigraph-dev, libigraph0, libigraph0-dev) 		0.5.4-1Steve M. Robbins <smr@debian.org> — Wed, 16 Mar 2011 23:42:10 -0500 0.5.4-1
1
#574825 igraph: additional packages present in source
0.5.4
insighttoolkit
(insighttoolkit3-examples, libinsighttoolkit3-dev, libinsighttoolkit3.20) 		3.20.0-17Steve M. Robbins <smr@debian.org> — Sat, 17 Sep 2011 22:21:18 -0500 3.20.0-17
3
#640667
patch
excessive build time -- not splitting the generated swig files and building with -O3
#586997 insighttoolkit: Builds duplicate of NIfTI library
#587589 libinsighttoolkit3-dev: libgdcm2-dev package should not be required to link to ITK
3.20.0
minc
(libminc-dev, libminc2-1, minc-tools) 		2.1.00-1Steve M. Robbins <smr@debian.org> — Tue, 17 Aug 2010 22:26:16 -0500 2.1.00-1
1
#585676 minc-tools: Cannot use cmdline tools (file not found)
2.1.00
ncbi-blast+
(ncbi-blast+, ncbi-blast+-legacy) 		2.2.25-6Olivier Sallou <olivier.sallou@irisa.fr> — Fri, 30 Sep 2011 12:31:05 -0400 2.2.25-6
1
#642991 ncbi-blast+: should notify why some tools are missing
2.2.25
plink 1.07-1Andreas Tille <tille@debian.org> — Fri, 23 Oct 2009 13:35:02 +0200 1.07-1
1
#536676 plink: FTBFS on MIPS.
1.07
sigma-align 1.1.3-1Charles Plessy <plessy@debian.org> — Mon, 27 Apr 2009 20:49:06 +0900 (1.1.3-2)Andreas Tille <tille@debian.org> — Sun, 09 Oct 2011 08:36:09 +0200 1.1.3-1
1
#644663 Regarding long description (feature request)
1.1.3
sofa-framework
(libsofa1, libsofa1-dev, sofa-apps, sofa-data, sofa-doc, sofa-tutorials) 		1.0~beta4-5.1Mehdi Dogguy <mehdi@debian.org> — Sun, 29 May 2011 18:02:12 +0200 (1.0~beta4-6)Nelson A. de Oliveira <naoliv@debian.org> — Wed, 17 Aug 2011 11:37:11 -0300 1.0~beta4-5.1
3
#638170
pending
[sofa-framework] FTBFS due to missing build dependency
#588278 sofa-tutorials: Sofa tutorials config file tutorial.pro uses SOFA_DIR=../.. that is incorrect
#639986 sofa-apps: the menu Help in the sofa GUI do not show any enabled menu point e.g about, ...
1.0-beta4
squizz
(libsquizz, libsquizz-dev, squizz) 		0.99a-1Olivier Sallou <olivier.sallou@irisa.fr> — Fri, 18 Mar 2011 11:03:46 +0100 (0.99a-2)Andreas Tille <tille@debian.org> — Fri, 15 Apr 2011 08:11:39 +0200 0.99a-1
1
#625929 Say if musical, or genetic, etc.
0.99a
t-coffee
(t-coffee, t-coffee-doc, t-coffee-examples) 		8.99-1Charles Plessy <plessy@debian.org> — Tue, 21 Jun 2011 14:14:10 +0900 8.99-1
1
#631249 t-coffee: Never exits on armel, consuming 100 % CPU.
8.99
vxl
(libvxl-dev, libvxl1-dev, libvxl1.14) 		1.14.0-9Mathieu Malaterre <mathieu.malaterre@gmail.com> — Fri, 26 Aug 2011 11:13:58 +0200 (1.14.0-10)Mathieu Malaterre <mathieu.malaterre@gmail.com> — Wed, 28 Sep 2011 12:13:03 +0200 1.14.0-9
1
#643643
upstream
error: conflicting declaration 'typedef long unsigned int intptr_t'
1.14.0
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