information
The Debian-Med project presents packages that are associated with
- medicine
- pre-clinical research
- life science.
Its developments are mostly focused on three areas for the moment:
- medical practice
- imaging
- bioinformatics
and can be installed directly from every Debian installation.
|
QA report
| Newer upstream available (36) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
altree (alphy, altree, altree-examples, libcutils-perl) |
|
1.0.1-5
|
|
1.1.1
|
biococoa (libbiococoa-dev, libbiococoa2) |
|
2.2.2-1
|
|
demos-1.0.0
|
bioperl-run (bioperl-run, libbio-perl-run-perl) |
|
1.6.9-1
|
|
1.006900
|
bioruby (libbio-ruby, libbio-ruby1.8) |
|
1.4.1-1
|
|
1.4.2
|
cain (cain, cain-common, python-cain) |
|
|
|
1_9
|
| cluster3 [non-free]
|
|
|
|
1.50
|
ctn (ctn-dev) |
|
3.0.6-13
|
|
3.2.0
|
| denoiser |
|
0.9.1-1
(experimental)
|
|
0.851
|
| edfbrowser |
|
1.38-1
|
|
1.39
|
elastix (elastix, elastix-doc) |
|
4.4-2
|
|
4.5
|
| ginkgocadx |
|
2.5.4.0~rc-1
|
|
2.5.4.1
|
gofigure2 (gofigure2, libgofigure-dev, libgofigure0) |
|
0.8.2-1
|
|
0.8.3
|
| imagej |
|
1.45k-1
|
|
1.45q
|
jam-lib (libjam-java, libjam-java-doc) |
|
0.0.r297-1
|
|
299
|
jebl2 (libjebl2-java, libjebl2-java-doc) |
|
0.0.r6-1
|
|
7
|
libgenome (libgenome-1.3-0, libgenome-1.3-0-dev, libgenome-1.3-dev) |
|
1.3.1-3
|
|
2.2.0
|
libmems (libmems-1.6-1, libmems-1.6-1-dev, libmems-1.6-dev) |
|
|
|
2.2.0
|
libsbml (${python:Provides}, libsbml, libsbml-cil, libsbml-dbg, libsbml-dev, libsbml-java, libsbml-matlab, libsbml-octave, libsbml-perl, libsbml-python, libsbml-ruby, libsbml5, libsbml5-cil, libsbml5-cil-doc, libsbml5-dbg, libsbml5-dev, libsbml5-doc, libsbml5-examples, libsbml5-java, libsbml5-java-doc, libsbml5-matlab, libsbml5-matlab-doc, libsbml5-octave, libsbml5-octave-doc, libsbml5-perl, libsbml5-perl-doc, libsbml5-python, libsbml5-python-doc, libsbml5-ruby1.8, python-sbml) |
|
|
|
5.1.0-b0
|
libswarm (libswarm-dev, libswarm2) |
|
|
|
2.4.1
|
| mafft |
|
6.860-1
|
|
6.861
|
meme [non-free]
(glam2, meme) |
|
|
|
4.7.0
|
microbiomeutil (chimeraslayer, microbiomeutil, microbiomeutil-data, nast-ier, wigeon) |
|
|
|
20101212
|
| mothur |
|
1.18.1-1
|
|
1.21.1
|
| murasaki |
|
|
|
1.68.6
|
netepi-analysis (netepi-analysis, netepi-analysis-web) |
|
|
|
0.9.0
|
| netepi-collection |
|
|
|
1.6.0
|
| openmrs |
|
|
|
1.8.2
|
openslide-java (libopenslide-java) |
|
|
|
0.9.2.0.9.2..
|
[non-free]
(paml, paml-doc) |
|
4.4e-1
|
|
4.4e
|
pdb2pqr (pdb2pqr, pdb2pqr-doc, propka) |
|
1.7-2
|
|
1.7.1a
|
| phyml |
|
2:20110526-1
|
|
20110919
|
pixelmed (pixelmed-java) |
|
20110901-1
|
|
20110928
|
python-biopython (${python:Provides}, python-biopython, python-biopython-doc, python-biopython-sql) |
|
1.57-1
|
|
1.58
|
(denoiser, qiime, qiime-denoiser) |
|
1.3.0-1
|
|
1.3.0
|
staden-io-lib (libstaden-read-dev, libstaden-read1, staden-io-lib-utils) |
|
1.12.4-1
|
|
1.12.5
|
vista (libvista-2-1, libvista-2-dev, vista-tools) |
|
|
|
2.2.1
|
| Ready for upload (51) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| anfo |
|
|
|
0.98
|
| |
|
|
|
Missing
(copyright info)
|
(libbio-formats-java, libbio-formats-java-doc) |
|
|
|
Invalid
(copyright info)
|
| |
|
1.002-7
(oldstable)
|
|
Missing
(copyright info)
|
btk-core (libbtk-core-dev) |
|
|
|
0.8.1
|
| |
|
|
|
Invalid
(copyright info)
|
| cinema |
|
|
|
3.0.23
|
| dazzle |
|
|
|
1.01
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
(freediams, freediams-data, freediams-doc, freediams-doc-en, freediams-doc-fr) |
|
0.5.4-1
|
|
InvalidVersion
(copyright info)
|
(freeicd, freeicd-data, freeicd-doc, freeicd-doc-en, freeicd-doc-fr) |
|
|
|
InvalidVersion
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
[non-free]
(libjai-core-java, libjai-core-java-doc) |
|
|
|
Missing
(copyright info)
|
[non-free]
(libjai-imageio-core-java, libjai-imageio-core-java-doc) |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
| kradview |
|
|
|
1.1.0
|
| |
|
|
|
Missing
(copyright info)
|
(martj, martj-doc) |
|
|
|
Missing
(copyright info)
|
| mauvealigner |
|
|
|
1.0.0
|
| |
|
|
|
InvalidVersion
(copyright info)
|
| medical |
|
|
|
1.0.1
|
| mosaik-aligner |
|
|
|
1.1.0021
|
(libkitware-mummy-runtime1.0-cil, mummy, mummy-doc) |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
(libnetcdf-java) |
|
|
|
Missing
(copyright info)
|
openslide-python (${python:Provides}, python-openslide) |
|
|
|
0.2.0
|
| |
|
|
|
Missing
(copyright info)
|
| plastimatch |
|
1.5.3.dfsg0-1
(experimental)
|
|
1.5.4
|
| |
|
|
|
Invalid
(copyright info)
|
| |
|
|
|
3.0-src
|
pynast (pynast, python-pynast) |
|
|
|
1.1
|
qtlreaper (python-reaper) |
|
|
|
1.1.1
|
| seq-gen |
|
1.3.2-1
|
|
1.3.2
|
sequenceconverter.app (biococoa.app, sequenceconverter.app) |
|
|
|
1.6.0
|
| |
|
|
|
Missing
(copyright info)
|
[non-free]
(solvate, solvate-doc) |
|
|
|
NotFound
(copyright info)
|
| |
|
2.07-1
|
|
Invalid
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
| [contrib]
|
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
vienna-rna (vienna-rna, vienna-rna-doc) |
|
|
|
1.8.5
|
(libvisad-java) |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
(libvtkedge, libvtkedge-dev) |
|
0.2.0~20110403-1
|
|
Missing
(copyright info)
|
| zodiac-zeden |
|
|
|
0.6.5
|
| NEW and incoming (1) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
gdcm (${python:Provides}, libgdcm-cil, libgdcm-java, libgdcm-tools, libgdcm2-dev, libgdcm2.0, libgdcm2.0-dbg, libvtkgdcm-cil, libvtkgdcm-java, libvtkgdcm-tools, libvtkgdcm2-dev, libvtkgdcm2.0, python-gdcm, python-vtkgdcm) |
|
2.0.18-5
(incoming)
|
|
2.0.18
|
| Packages with strange versions in the repository (9) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| |
|
1.3.1-1
|
|
1.03
|
| [non-free]
|
|
3.69+20100721-3
|
|
3.69
|
| [contrib]
|
|
1.9+cvs20100605+dfsg-3
|
|
Missing
(copyright info)
|
(igstk-doc, igstk-examples, libigstk4, libigstk4-dbg, libigstk4-dev) |
|
4.4.0-2
|
|
4.4
|
(libctapimkt-dev, libctapimkt0, libctapimkt0-dev) |
|
1.0.1-1.1
|
|
1.0.1
|
| |
|
20090924-2
|
|
NotFound
(copyright info)
|
(muscle, muscle-doc) |
|
3.70+fix1-2
|
|
3.8.31
|
(libsrf-dev, srf-doc) |
|
0.1+dfsg-1
|
|
0.1
|
| |
|
0.5.1+20100823-1
|
|
0.5
|
| Work in progress (65) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| |
|
0.81-5
|
|
Invalid
(copyright info)
|
| agdbnet |
|
|
|
1.0.4
|
| |
|
1.7-1
|
|
NotFound
(copyright info)
|
| |
|
2.2-3
|
|
Invalid
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| bagphenotype |
|
|
|
0.20100316
|
[non-free]
(beast-doc, beast-examples, beast-mcmc, beast-mcmc-lib) |
|
|
|
Missing
(copyright info)
|
(bioimagesuite, bioimagesuite-data, libbioimagesuite2) |
|
|
|
Missing
(copyright info)
|
| [non-free]
|
|
|
|
Invalid
(copyright info)
|
(libcharls-dev, libcharls1) |
|
1.0-1
|
|
NotFound
(copyright info)
|
| [non-free]
|
|
0.15-1
|
|
DownloadError
(copyright info)
|
(ncoils) |
|
2002-2
|
|
Missing
(copyright info)
|
| |
|
3.0.6-3
|
|
Missing
(copyright info)
|
dcm4che (libdcm4che-java, libdcm4che-java-doc) |
|
|
|
2.0.25
|
(dialign-t, dialign-t-doc, dialign-tx, dialign-tx-data) |
|
1.0.2-2
|
|
Invalid
(copyright info)
|
| |
|
1.53-1
|
|
NotFound
(copyright info)
|
ecell (ecell, ecell-doc) |
|
|
|
3.2.2
|
[non-free]
(eigensoft, eigensoft-dbg) |
|
|
|
NotFound
(copyright info)
|
(embassy-domainatrix-kaptain, emboss-kaptain) |
|
|
|
DownloadError
(copyright info)
|
(epigrass, epigrass-doc) |
|
2.0.4-1
|
|
Invalid
(copyright info)
|
| |
|
1.2.2-9
|
|
Missing
(copyright info)
|
(fastlink, fastlink-doc) |
|
4.1P-fix95-2
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
freemedforms (freemedforms, freemedforms-data, freemedforms-doc) |
|
|
|
0.5.9%257Ealpha1
|
gamgi (gamgi, gamgi-dat, gamgi-doc) |
|
0.15.3-1
|
|
0.15.5-exp
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
2.0-6
|
|
DownloadError
(copyright info)
|
| |
|
0.98d-3
|
|
DownloadError
(copyright info)
|
| |
|
1064-1
|
|
NotFound
(copyright info)
|
(${python:Provides}, gnumed-client, gnumed-client-de, gnumed-common, gnumed-doc) |
|
0.9.10-2
|
|
Invalid
(copyright info)
|
| |
|
15.10-1
|
|
Invalid
(copyright info)
|
| haploview [contrib]
|
|
|
|
4.1
|
| |
|
1:2.03+20110620-1
|
|
Invalid
(copyright info)
|
| |
|
0.5.svn.20100421-1
|
|
Invalid
(copyright info)
|
(loki, loki-doc) |
|
2.4.7.4-4
|
|
Missing
(copyright info)
|
| mage2tab |
|
|
|
0.9
|
| |
|
2.3-9
|
|
NotFound
(copyright info)
|
| |
|
|
|
DownloadError
(copyright info)
|
| [non-free]
|
|
2.3b3-5
|
|
Missing
(copyright info)
|
| |
|
2.0.217-3
|
|
NotFound
(copyright info)
|
| [non-free]
|
|
3.0-2
|
|
Invalid
(copyright info)
|
(mustang, mustang-testdata) |
|
3.2.1-1
|
|
Invalid
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
|
|
Invalid
(copyright info)
|
| |
|
3.2.0-1
|
|
Missing
(copyright info)
|
| |
|
|
|
Missing
(copyright info)
|
| |
|
0.2.0-2
|
|
NotFound
(copyright info)
|
(plato, plato-dbg) |
|
|
|
DownloadError
(copyright info)
|
| prank [non-free]
|
|
|
|
100802
|
| |
|
1.0-7
|
|
Invalid
(copyright info)
|
| [contrib]
|
|
1.0-1
|
|
DownloadError
(copyright info)
|
| rdp-classifier |
|
|
|
2.3
|
| |
|
1-8
|
|
Missing
(copyright info)
|
| |
|
20020327-2
(stable)
|
|
Missing
(copyright info)
|
| |
|
2.1-2
|
|
Missing
(copyright info)
|
[non-free]
(rosetta, rosetta-dbg) |
|
|
|
Missing
(copyright info)
|
swissknife (libswiss-perl, swissknife) |
|
1.67-1
|
|
1.67
|
| tab2mage |
|
|
|
20080626
|
| tacg |
|
|
|
4.1.0
|
| |
|
20110130-2
|
|
NotFound
(copyright info)
|
| toothchart |
|
|
|
0.02.0
|
(tree-ppuzzle, tree-puzzle, tree-puzzle-doc) |
|
5.2-6
|
|
Invalid
(copyright info)
|
| |
|
0.1.6-1
|
|
NotFound
(copyright info)
|
| [non-free]
|
|
|
|
Missing
(copyright info)
|
| |
|
|
|
NotFound
(copyright info)
|
| With bugs (17) |
| Package |
Repository |
Archive |
Bugs |
Upstream |
| aeskulap |
|
0.2.2b1-8
|
|
0.2.2b1
|
arb [non-free]
(arb, arb-common, arb-doc, libarb) |
|
5.2-1
|
|
5.2
|
dcmtk (dcmtk, dcmtk-doc, dcmtk-www, libdcmtk2, libdcmtk2-dev) |
|
3.6.0-8
|
|
3.6.0
|
| dicom3tools |
|
1.0~20110918-1
|
|
1.0~20110918
|
emboss-explorer (emboss-explorer, libemboss-acd-perl) |
|
2.2.0-7
|
|
2.2.0
|
| figtree |
|
1.3.1-1
|
|
1.3.1
|
gdpc (gdpc, gdpc-examples) |
|
2.2.5-1
|
|
2.2.5
|
igraph (libigraph-dev, libigraph0, libigraph0-dev) |
|
0.5.4-1
|
|
0.5.4
|
insighttoolkit (insighttoolkit3-examples, libinsighttoolkit3-dev, libinsighttoolkit3.20) |
|
3.20.0-17
|
|
3.20.0
|
minc (libminc-dev, libminc2-1, minc-tools) |
|
2.1.00-1
|
|
2.1.00
|
ncbi-blast+ (ncbi-blast+, ncbi-blast+-legacy) |
|
2.2.25-6
|
|
2.2.25
|
| plink |
|
1.07-1
|
|
1.07
|
| sigma-align |
|
1.1.3-1
|
|
1.1.3
|
sofa-framework (libsofa1, libsofa1-dev, sofa-apps, sofa-data, sofa-doc, sofa-tutorials) |
|
1.0~beta4-5.1
|
|
1.0-beta4
|
squizz (libsquizz, libsquizz-dev, squizz) |
|
0.99a-1
|
|
0.99a
|
t-coffee (t-coffee, t-coffee-doc, t-coffee-examples) |
|
8.99-1
|
|
8.99
|
vxl (libvxl-dev, libvxl1-dev, libvxl1.14) |
|
1.14.0-9
|
|
1.14.0
|
Options
|