Résumé
Physics
paquets Debian Med pour les physiciens du domaine médical
Ce méta paquet dépend d'une collection de logiciels et de documentation
utiles pour les physiciens du domaine médical en radiothérapie, imagerie de
diagnostics et domaines associés.
La liste de droite comprend divers projets logiciels qui sont d'un certain intérêt au projet Debian Med. Actuellement, seuls quelques-uns d'entre eux sont disponibles sous forme de paquets Debian. Notre objectif est d'inclure tous les logiciels dans Debian Med, qui peuvent raisonnablement participer à un Debian Pure Blend de haute qualité.
Pour un meilleur aperçu de la disponibilité du projet comme paquet Debian, toutes les entêtes ont un code couleur selon le schéma suivant :
Si vous découvrez un projet qui pourrait être un bon candidat pour Debian Med,
ou si vous avez préparé un paquet non officiel pour Debian, n'hésitez pas à
nous envoyer une description de ce projet sur la liste de diffusion Debian Med
Liens vers les autres tâches
|
Debian Med Physics packages
Paquets Debian officiels avec une haute priorité
|
Octave
GNU Octave language for numerical computations
|
| Versions of package octave |
| Release | Version | Architectures |
| wheezy | 3.6.2-5+deb7u1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| jessie | 3.6.4-3 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 3.6.4-3 | amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| Debtags of package octave: |
| field | mathematics |
| role | program |
| suite | gnu |
|
Licence: DFSG free
|
|
Octave is a (mostly Matlab (R) compatible) high-level language, primarily
intended for numerical computations. It provides a convenient command-line
interface for solving linear and nonlinear problems numerically.
Octave can be dynamically extended with user-supplied C++ files.
The package is enhanced by the following packages:
texmacs
|
|
|
Paw
Physics Analysis Workstation (Station d'analyse pour la physique) - programme d'analyse graphique
|
| Versions of package paw |
| Release | Version | Architectures |
| wheezy | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| jessie | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| sid | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| Debtags of package paw: |
| field | physics |
| interface | x11 |
| role | program |
| scope | utility |
| uitoolkit | xlib |
| use | viewing |
| x11 | application |
|
Licence: DFSG free
|
|
CERNLIB est une suite d'outils et de bibliothèques d'analyses destinée à
l'utilisation au cours d'expérimentations en physique ainsi que dans
d'autres domaines tels que les sciences du vivant.
PAW est un programme qui fournit une présentation graphique interactive
ainsi qu'un outil d'analyse statistique et mathématique. Il est conçu pour
fonctionner sur des objets familiers aux physiciens tels que les
histogrammes, fichiers d'événements (Ntuples), vecteurs, etc.
Sur les architectures 64 bits, ce programme est lié statiquement aux
bibliothèques du CERN afin de fonctionner correctement car sa conception
n'est pas très propre vis-à-vis de cette architecture.
|
|
|
Paw++
Outils d'analyse physique (version améliorée avec Lesstif)
|
| Versions of package paw++ |
| Release | Version | Architectures |
| wheezy | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| jessie | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| sid | 2.14.04.dfsg.2-8 | amd64,armel,i386,ia64,mips,mipsel,powerpc,s390,sparc |
| Debtags of package paw++: |
| field | physics |
| interface | x11 |
| role | program |
| scope | utility |
| uitoolkit | motif |
| use | viewing |
| x11 | application |
|
Licence: DFSG free
|
|
CERNLIB est une suite d'outils et de bibliothèques d'analyses destinés aux
expériences de physique mais aussi à d'autres domaines tels que les
sciences du vivant.
Ce paquet comprend Paw++, un programme interactif utilisé pour l'analyse et
la présentation graphique. Paw++ est le même programme que PAW (dans le
paquet « paw », mais avec une interface graphique améliorée basée sur
Motif, compilé avec Lesstif dans Debian.
Le programme est lié statiquement avec les bibliothèques CERN sur les
architectures 64 bits, la conception n'étant pas très adaptée vis-à-vis du
64 bits.
|
|
|
R-base
GNU R statistical computation and graphics system
|
| Versions of package r-base |
| Release | Version | Architectures |
| squeeze | 2.11.1-6 | all |
| wheezy | 2.15.1-4 | all |
| jessie | 3.0.0-2 | all |
| sid | 3.0.0-2 | all |
| sid | 3.0.1~20130512-1 | all |
| sid | 3.0.1-3 | all |
| Debtags of package r-base: |
| devel | lang:r |
| field | statistics |
| role | metapackage, dummy |
| suite | gnu |
|
Licence: DFSG free
|
|
R is a system for statistical computation and graphics. It consists
of a language plus a run-time environment with graphics, a debugger,
access to certain system functions, and the ability to run programs
stored in script files.
The design of R has been heavily influenced by two existing languages:
Becker, Chambers & Wilks' S and Sussman's Scheme. Whereas the
resulting language is very similar in appearance to S, the underlying
implementation and semantics are derived from Scheme.
The core of R is an interpreted computer language which allows
branching and looping as well as modular programming using functions.
Most of the user-visible functions in R are written in R. It is
possible for the user to interface to procedures written in the
C, C++, or FORTRAN languages for efficiency, and many of R's core
functions do so. The R distribution contains functionality for a
large number of statistical procedures and underlying applied math
computations. There is also a large set of functions which provide
a flexible graphical environment for creating various kinds of data
presentations.
Additionally, several thousand extension "packages" are available from
CRAN, the Comprehensive R Archive Network, many also as Debian packages,
named 'r-cran-'.
This package is a metapackage which eases the transition from the
pre-1.5.0 package setup with its larger r-base package. Once installed, it
can be safely removed and apt-get will automatically upgrade its components
during future upgrades. Providing this package gives a way to users to
then only install r-base-core if they so desire.
The package is enhanced by the following packages:
texmacs
|
|
Paquets Debian officiels avec une faible priorité
|
Paw-demos
Exemples et tests pour PAW
|
| Versions of package paw-demos |
| Release | Version | Architectures |
| wheezy | 2.14.04.dfsg.2-8 | all |
| jessie | 2.14.04.dfsg.2-8 | all |
| sid | 2.14.04.dfsg.2-8 | all |
| Debtags of package paw-demos: |
| devel | testing-qa, examples |
| field | physics |
| interface | x11, commandline |
| role | program |
| x11 | application |
|
Licence: DFSG free
|
|
CERNLIB est une suite d'outils et de bibliothèques d'analyses destinée à
l'utilisation au cours d'expérimentations en physique ainsi que dans
d'autres domaines tels que les sciences du vivant.
Ce paquetage comporte les scripts d'exemple à utiliser avec PAW ou PAW+
ainsi que les scripts de tests destinés à contrôler le comportement de
ceux-ci. Ces scripts peuvent être exécutés à l'aide du programme paw-demos
inclus.
|
|
Pas de paquet disponible mais un intérêt signalé (bogue WNPP)
library for biomedical signal processing
|
Licence: GPL
Paquet Debian indisponible
|
|
BioSig is an open source software library for biomedical signal
processing, featuring for example the analysis of biosignals such as
the electroencephalogram (EEG), electrocorticogram (ECoG),
electrocardiogram (ECG), electrooculogram (EOG), electromyogram
(EMG), respiration, and so on. Major application areas are:
Neuroinformatics, brain-computer interfaces, neurophysiology,
psychology, cardiovascular systems and sleep research. The aim of the
BioSig project is to foster research in biomedical signal processing
by providing open source software tools for many different
applications. Generally, many concerns have to be addressed in this
scientific field. BioSig handles this by providing solutions for data
acquisition, artifact processing, quality control, feature
extraction, classification, modeling, data visualization, and so on.
BioSig consists of some (more or less) coherent parts, for more
details take a look at the project page:
- BioSig for Octave and Matlab (biosig4octmat): A toolbox for Octave
and Matlab with powerful data import and export filters, feature
extraction algorithms, classification methods, and a powerful
viewing and scoring software.
- BioSig for C/C++ (biosig4c++) containing:
reading and writing routines for different biosignal data formats.
- libbiosig - a library for reading and writing of a number of data
formats. libbiosig is used by save2gdf, mexSLOAD and SigViewer
- save2gdf - a converter between different data formats, and can be used
to show the header information
- mexSLOAD is a MEX-interface for loading biosignal data into Octave
(its much faster than the pure M-tools from biosig4octmat). It requires
Octave-headers and libbiosig
- SigViewer (sigviewer): A stand-alone viewing and scoring software for
biosignals (especially for EEG signals) based on C++ and the
platform-independent GUI toolkit Qt 4.
- rtsBCI (rtsbci): A real-time BCI system implemented in Matlab and
Simulink.
- BioProFeed (bioprofeed)
- BCIx (bcix)
|
Geant4 Application for Emission Tomography
|
Licence: LGPL
Paquet Debian indisponible
|
|
GATE incorporates the Geant4 libraries in a modular, versatile, and
scripted simulation toolkit which is adapted to the field of nuclear
medicine both in PET (Positron Emission Tomography) and SPECT (Single
Photon Emission Computer Tomography). It allows the accurate description
of time-dependent phenomena such as source or detector movement and
source decay kinetics. The ability to synchronize all time-dependent
components allows a coherent description of the acquisition process. It
makes it possible to perform realistic simulations of data acquisitions
in time.
|
platform for the design, test and use of BCI
|
Licence: LGPL
Paquet Debian indisponible
Language: C++
|
|
OpenViBE enables to design, test and use Brain-Computer Interfaces (BCI).
OpenViBE is a software for real-time neurosciences (that is, for
real-time processing of brain signals). It can be used to acquire, filter,
process, classify and visualize brain signals in real time.
|
|