Debian Med Project
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Summary
Statistics
Debian Med statistics

This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care.

The list to the right includes various software projects which are of some interest to the Debian Med Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in Debian Med which can sensibly add to a high quality Debian Pure Blend.

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Statistics packages

Official Debian packages with high relevance

R-cran-qvalue
GNU R package for Q-value estimation for FDR control
Versions of package r-cran-qvalue
ReleaseVersionArchitectures
sid1.18.0-2all
squeeze1.18.0-2all
Popcon: 7 users (27 upd.)*
Versions and Archs
License: DFSG free
Svn

This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

R-cran-randomforest
GNU R package implementing the random forest classificator
Versions of package r-cran-randomforest
ReleaseVersionArchitectures
sid4.5-33-1s390,alpha,sparc,amd64,armel,hppa,hurd-i386,i386,ia64,mips,mipsel,powerpc
squeeze4.5-30-1mips,amd64,mipsel,i386,powerpc,hppa,s390,ia64,sparc,armel
Popcon: 10 users (18 upd.)*
Versions and Archs
License: DFSG free
Svn

RandomForest implements Breiman’s random forest algorithm (based on Breiman and Cutler’s original Fortran code) for classification and regression. It can also be used in unsupervised mode for assessing proximities among data points.

The technique uses multiple decision trees and combines their individual votes.

Official Debian packages with lower relevance

Science-statistics
Debian Science Statistics packages
Versions of package science-statistics
ReleaseVersionArchitectures
sid0.7all
squeeze0.7all
lenny0.3all
Popcon: 20 users (12 upd.)*
Versions and Archs
License: DFSG free
Svn

This metapackage is part of the Debian Pure Blend "Debian Science" and installs packages related to statistics. This task is a general task which might be useful for any scientific work. It depends from a lot of R packages as well as from other tools which are useful to do statistics. Moreover the Science Mathematics task is suggested to optionally install all mathematics related software.

*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 88476