Debian Med Project
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Summary
Tools
Debian Med several tools

This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health.

The list to the right includes various software projects which are of some interest to the Debian Med Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in Debian Med which can sensibly add to a high quality Debian Pure Blend.

For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:

If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list

Links to other tasks

Debian Med Tools packages

Official Debian packages with high relevance

Edfbrowser
viewer for biosignal storage files such as bdf and edf
Versions of package edfbrowser
ReleaseVersionArchitectures
squeeze1.24-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.48-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.51-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package edfbrowser:
roleprogram
useviewing
Popcon: 3 users (3 upd.)*
Versions and Archs
License: DFSG free
Svn

EDFbrowser is a viewer for medical timeseries storage files containing data such as EEG, EMG, and ECG signals. It supports EDF(+) and BDF(+) file formats. Apart from viewing the files, it also supports some editing operations and can convert the biomedical files to other formats.

Please cite: Martin Wolgast, Lars-Gunnar Lundh and Gardar Viborg: Cognitive reappraisal and acceptance: An experimental comparison of two emotion regulation strategies. Behaviour Research and Therapy 49(12):858–866 (2011)
Hunspell-de-med
German medical dictionary for hunspell
Maintainer: Tobias Quathamer
Versions of package hunspell-de-med
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
sid20110608-1all
Debtags of package hunspell-de-med:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 29 users (5 upd.)*
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License: DFSG free

This package contains a German medical dictionary for use with the hunspell spellchecker which is currently used within OpenOffice.org2 and as an ispell clone.

Hunspell-en-med
English medical dictionary for hunspell
Versions of package hunspell-en-med
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sid0.0.20080513-1all
Popcon: 1 users (1 upd.)*
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License: DFSG free
Git

This package contains an English medical dictionary for use with the hunspell spell checker which is currently used by OpenOffice.org2

Pcalendar
track menstrual cycles and predict fertility periods
Versions of package pcalendar
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wheezy3.2.0-2all
sid3.2.0-2all
experimental3.3.0-1all
Debtags of package pcalendar:
interfacex11
roleprogram
x11application
Popcon: 46 users (1 upd.)*
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License: DFSG free
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Periodic Calendar is a GUI application which assists in women menstrual cycles tracking and fertility periods prediction. This information can be used as supportive either for conception or contraception planning.

Periodic Calendar provides support for BBT and sympto-thermal methods which have the highest reliability in fertility periods prediction. User can choose any subset of the features to be used or even fall to the generic calendar method (which if used alone is very unreliable).

Authors of the Periodic Calendar still insist on not being an equal substitute to the fertility planning consultants or doctors. Before using this application please talk to your doctor or read a good book on the subject.

THE PREDICTIONS MADE BY THIS PROGRAM CAN BE NEVER BE CONSIDERED AS FINAL. THE METHODS USED ARE NOT 100% EFFECTIVE FOR ALL WOMEN.

Screenshots of package pcalendar
Pondus
personal weight manager for GTK+2
Maintainer: Eike Nicklas
Versions of package pondus
ReleaseVersionArchitectures
squeeze0.7.2-1all
wheezy0.8.0-1all
sid0.8.0-1all
Debtags of package pondus:
fieldmedicine
interfacex11
roleprogram
scopeutility
uitoolkitgtk
usemonitor
x11application
Popcon: 32 users (7 upd.)*
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License: DFSG free
Svn

Pondus keeps track of your body weight and, optionally, the percentage of bodyfat, muscle and water. It aims to be simple to use, lightweight and fast. All data can be plotted to get a quick overview of the history of your weight. A simple weight planner allows one to define "target weights" and this plan can be compared with the actual measurements in a plot.

Other screenshots of package pondus
VersionURL
0.5.3-1http://screenshots.debian.net/screenshots/p/pondus/2101_large.png
Screenshots of package pondus
Python-clips
Python module to interface the CLIPS expert system shell library
Versions of package python-clips
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sid1.0.7.348+clips-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
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License: DFSG free
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CLIPS is an expert system shell / inference engine written by NASA (see Debian package clips).

pyclips are the Python bindings to that engine.

Quitcount
Small tool which may help yourself quit smoking
Maintainer: Ricardo Mones
Versions of package quitcount
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squeeze1.7-1amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
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sid2.0-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package quitcount:
fieldstatistics, medicine
interfacex11
roleprogram
scopeapplication
uitoolkitgtk
usemeasuring
works-withpeople
x11application
Popcon: 23 users (2 upd.)*
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License: DFSG free
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QuitCount is a simple counter that shows what you spared since you quit smoking. Once you tell it the date you quit, how much you smoked, and how much it cost, it'll tell you how many cigarettes you didn't smoke since, and how much it makes in terms of money, tar, and life expectancy.

Screenshots of package quitcount
Wgerman-medical
German medical dictionary words for /usr/share/dict
Maintainer: Tobias Quathamer
Versions of package wgerman-medical
ReleaseVersionArchitectures
squeeze20100204-1all
wheezy20110608-1all
sid20110608-1all
Debtags of package wgerman-medical:
culturegerman
made-ofdictionary
roleapp-data
usechecking
Popcon: 39 users (11 upd.)*
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License: DFSG free

This package provides the file /usr/share/dict/german-medical containing a list of German medical words. This list can be used by spelling checkers, and by programs such as look(1).

Workrave
Repetitive Strain Injury prevention tool
Maintainer: Francois Marier
Versions of package workrave
ReleaseVersionArchitectures
squeeze1.9.1-3amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc
wheezy1.9.909+abc941eb70-1amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
sid1.9.909+abc941eb70-1amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc
upstream1.10
Debtags of package workrave:
hardwareinput
interfacex11
roleprogram
scopeutility
suitegnome
uitoolkitgtk
usemonitor
x11application, applet
Popcon: 614 users (110 upd.)*
Newer upstream!
License: DFSG free
Git

Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit.

It includes a system tray applet that works with GNOME and KDE and has network capabilities to monitor your activity even if switching back and forth between different computers is part of your job.

Workrave offers many more configuration options than other similar tools.

Other screenshots of package workrave
VersionURL
1.9.0-6http://screenshots.debian.net/screenshots/w/workrave/872_large.png
Screenshots of package workrave

Official Debian packages with lower relevance

Cl-pubmed
Common Lisp package to query Pubmed medical literature database
Maintainer: Kevin M. Rosenberg
Versions of package cl-pubmed
ReleaseVersionArchitectures
squeeze2.1.3-5all
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sid2.1.3-5all
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devellibrary, lang:lisp
fieldbiology
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License: DFSG free
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This library has functions for querying the PubMed medical literature database and parsing the XML results into Common Lisp objects. This package uses the cl-aserve for HTTP fetches.

Cycle
kalenteriohjelma naisille
Versions of package cycle
ReleaseVersionArchitectures
squeeze0.3.1-7all
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sid0.3.1-8all
Debtags of package cycle:
interfacex11
roleprogram
uitoolkitwxwidgets
usetimekeeping
Popcon: 50 users (8 upd.)*
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License: DFSG free

Cycle on naisille tehty kalenteri. Ohjelmalla voidaan laskea kierron pituuden tai useamman kierron tilastojen perusteella erilaisia tietoja kuukautiskierron vaiheista. Näitä tietoja ovat muun muassa niin sanotut varmat päivät, hedelmällisyysjakso, arvioitu lapsen syntymäpäivä ja niin edelleen. Ohjelmalla on mahdollista myös kirjoittaa muistiinpanoja ja se auttaa hormoniehkäisypillereiden käytössä.

Ohjelmalla on mahdollista:

  • Laskea kuukautispäiviä, perustuen edellisen kierron pituuteen ja tilastoihin.

  • Laskea niin kutsuttaja "varmoja" päiviä.

  • Määritellä lapsen syntymäpäivä (laskettu aika).
  • Mahdollisuus kirjoittaa merkintöjä ja muistiinpanoja.
  • Mahdollisuus seurata hormonilääkityksen vaikutusta.
  • Mahdollisuus käyttää myös useamman käyttäjän versiona. Käyttäjien tiedot on suojattu salasanoin.

HUOM: Tämä ohjelma ei ole täysin luotettava. Tämä ohjelma ei kykene estämään sukupuolitauteja kuten esimerkiksi AIDS. Tämä ohjelma on tehty lähinnä ihmisille jotka ovat kiinnostuneita terveydestään. Gynekologia tämä ohjelma ei korvaa millään tasolla.

Screenshots of package cycle
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of cycle because cycle is outdated, not maintained any more and pcalendar simply overpasses it.

Entangle
Tethered Camera Control & Capture
Versions of package entangle
ReleaseVersionArchitectures
sid0.5.1-1amd64,armel,armhf,i386,ia64,mips,mipsel,powerpc,s390,s390x,sparc
Debtags of package entangle:
uitoolkitgtk
Popcon: 11 users (63 upd.)*
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License: DFSG free
Git

Entangle provides a graphical interface for "tethered shooting", aka taking photographs with a digital camera completely controlled from the computer.

Using Entangle is as easy as 1,2,3...

  • Connect camera
  • Launch Entangle
  • Shoot photos

With a sufficiently capable digital SLR camera Entangle allows:

  • Trigger the shutter from the computer
  • Live preview of scene before shooting
  • Automatic download and display of photos as they are shot
  • Control of all camera settings from computer
Screenshots of package entangle
Mencal
A menstruation calendar
Versions of package mencal
ReleaseVersionArchitectures
squeeze2.3-9all
wheezy2.3-9all
sid2.3-9all
Debtags of package mencal:
fieldmedicine
interfacecommandline
roleprogram
scopeutility
usetimekeeping
Popcon: 13 users (5 upd.)*
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License: DFSG free
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Mencal is a menstruation calendar written in Perl.

It is a simple variation of the well-known Unix command cal. The main difference is that you can have some periodically repeating days highlighted in color. This can be used to track menstruation (or other) cycles conveniently.

Author: C. McCohy mccohy@kyberdigi.cz

Screenshots of package mencal
Remark of Debian Med team: Use pcalendar instead

Please consider using pcalendar instead of mencal because mencal is outdated, not maintained any more and pcalendar simply overpasses it.

Debian packages in contrib or non-free

Mssstest
Normalisation of disease scores for patients with Multiple Sclerosis
Versions of package mssstest
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squeeze3.0-2 (non-free)i386
wheezy3.0-3 (non-free)amd64,i386
sid3.0-3 (non-free)amd64,i386
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fieldmedicine
interfacecommandline
roleprogram
scopeutility
usechecking
works-withpeople
works-with-formatplaintext
Popcon: 2 users (0 upd.)*
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License: non-free
Svn

MSSStest is a program for implementing the method described in the article The Multiple Sclerosis Severity Score. R. Roxburgh S. Seaman et al. (2004), accepted for publication by Neurology. It calculates MSSS scores and uses these scores to test for differences between disease progression rates in different groups defined by genotype at some locus. A brief description of the method is given below.

Please cite: R H S R Roxburgh, S R Seaman, T Masterman, A E Hensiek, S J Sawcer, S Vukusic, I Achiti, C Confavreux, M Coustans, E le Page, G Edan, G V McDonnell, S Hawkins, M Trojano, M Liguori, E Cocco, M G Marrosu, F Tesser, M A Leone, A Weber, F Zipp, B Miterski, J T Epplen, A Oturai, P Soelberg Sorensen, E G Celius, N Tellez Lara, X Montalban, P Villoslada, A M Silva, M Marta, I Leite, B Dubois, J Rubio, H Butzkueven, T Kilpatrick, M P Mycko, K W Selmaj, M E Rio, M Sa, G Salemi, G Savettieri, J Hillert and D A S Compston: Multiple Sclerosis Severity Score: using disability and disease duration to rate disease severity. (PubMed,eprint) Neurology 64(7):1144-51 (2005)
*Popularitycontest results: number of people who use this package regularly (number of people who upgraded this package recently) out of 164378