Summary
Tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
The list to the right includes various software projects which are of some interest to the Debian Med Project. Currently, only a few of them are available as Debian packages. It is our goal, however, to include all software in Debian Med which can sensibly add to a high quality Debian Pure Blend.
For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme:
If you discover a project which looks like a good candidate for Debian Med
to you, or if you have prepared an unofficial Debian package, please do not hesitate to
send a description of that project to the Debian Med mailing list
Links to other tasks
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Debian Med Tools packages
Official Debian packages with high relevance
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Edfbrowser
viewer for biosignal storage files such as bdf and edf
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| Versions of package edfbrowser |
| Release | Version | Architectures |
| squeeze | 1.24-1 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
| wheezy | 1.48-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| jessie | 1.51-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 1.51-1 | amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| Debtags of package edfbrowser: |
| interface | x11 |
| role | program |
| uitoolkit | qt |
| use | viewing |
| x11 | application |
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License: DFSG free
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EDFbrowser is a viewer for medical timeseries storage files containing data
such as EEG, EMG, and ECG signals. It supports EDF(+) and BDF(+) file
formats.
Apart from viewing the files, it also supports some editing operations and
can convert the biomedical files to other formats.
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Hunspell-de-med
German medical dictionary for hunspell
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| Versions of package hunspell-de-med |
| Release | Version | Architectures |
| squeeze | 20100204-1 | all |
| wheezy | 20110608-1 | all |
| jessie | 20110608-1 | all |
| sid | 20110608-1 | all |
| Debtags of package hunspell-de-med: |
| culture | german |
| made-of | dictionary |
| role | app-data |
| use | checking |
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License: DFSG free
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This package contains a German medical dictionary for use with the
hunspell spellchecker which is currently used within OpenOffice.org2
and as an ispell clone.
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Hunspell-en-med
English medical dictionary for hunspell
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| Versions of package hunspell-en-med |
| Release | Version | Architectures |
| jessie | 0.0.20080513-1 | all |
| sid | 0.0.20080513-1 | all |
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License: DFSG free
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This package contains an English medical dictionary for use
with the hunspell spell checker which is currently used by
OpenOffice.org2
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Pcalendar
track menstrual cycles and predict fertility periods
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| Versions of package pcalendar |
| Release | Version | Architectures |
| wheezy | 3.2.0-2 | all |
| jessie | 3.2.0-2 | all |
| sid | 3.2.0-2 | all |
| experimental | 3.3.0-1 | all |
| Debtags of package pcalendar: |
| interface | x11 |
| role | program |
| x11 | application |
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License: DFSG free
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Periodic Calendar is a GUI application which assists in women menstrual
cycles tracking and fertility periods prediction. This information can
be used as supportive either for conception or contraception planning.
Periodic Calendar provides support for BBT and sympto-thermal methods
which have the highest reliability in fertility periods prediction. User
can choose any subset of the features to be used or even fall to the generic
calendar method (which if used alone is very unreliable).
Authors of the Periodic Calendar still insist on not being an equal
substitute to the fertility planning consultants or doctors. Before
using this application please talk to your doctor or read a good book
on the subject.
THE PREDICTIONS MADE BY THIS PROGRAM CAN BE NEVER BE CONSIDERED AS FINAL. THE
METHODS USED ARE NOT 100% EFFECTIVE FOR ALL WOMEN.
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Pondus
personal weight manager for GTK+2
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| Versions of package pondus |
| Release | Version | Architectures |
| squeeze | 0.7.2-1 | all |
| wheezy | 0.8.0-1 | all |
| jessie | 0.8.0-1 | all |
| sid | 0.8.0-1 | all |
| Debtags of package pondus: |
| field | medicine |
| interface | x11 |
| role | program |
| scope | utility |
| uitoolkit | gtk |
| use | monitor |
| x11 | application |
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License: DFSG free
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Pondus keeps track of your body weight and, optionally, the percentage of
bodyfat, muscle and water. It aims to be simple to use, lightweight and
fast. All data can be plotted to get a quick overview of the history of
your weight. A simple weight planner allows one to define "target weights"
and this plan can be compared with the actual measurements in a plot.
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Python-clips
Python module to interface the CLIPS expert system shell library
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| Versions of package python-clips |
| Release | Version | Architectures |
| jessie | 1.0.7.348+clips-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 1.0.7.348+clips-1 | amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
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License: DFSG free
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CLIPS is an expert system shell / inference engine written by NASA
(see Debian package clips).
pyclips are the Python bindings to that engine.
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Quitcount
Small tool which may help yourself quit smoking
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| Versions of package quitcount |
| Release | Version | Architectures |
| squeeze | 1.7-1 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
| wheezy | 2.0-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| jessie | 2.0-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 2.0-1 | amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| Debtags of package quitcount: |
| field | statistics, medicine |
| interface | x11 |
| role | program |
| scope | application |
| uitoolkit | gtk |
| use | measuring |
| works-with | people |
| x11 | application |
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License: DFSG free
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QuitCount is a simple counter that shows what you spared since
you quit smoking. Once you tell it the date you quit, how much
you smoked, and how much it cost, it'll tell you how many
cigarettes you didn't smoke since, and how much it makes in
terms of money, tar, and life expectancy.
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Wgerman-medical
German medical dictionary words for /usr/share/dict
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| Versions of package wgerman-medical |
| Release | Version | Architectures |
| squeeze | 20100204-1 | all |
| wheezy | 20110608-1 | all |
| jessie | 20110608-1 | all |
| sid | 20110608-1 | all |
| Debtags of package wgerman-medical: |
| culture | german |
| made-of | dictionary |
| role | app-data |
| use | checking |
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License: DFSG free
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This package provides the file /usr/share/dict/german-medical containing
a list of German medical words. This list can be used by spelling checkers,
and by programs such as look(1).
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Workrave
Repetitive Strain Injury prevention tool
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| Versions of package workrave |
| Release | Version | Architectures |
| squeeze | 1.9.1-3 | amd64,armel,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,sparc |
| wheezy | 1.9.909+abc941eb70-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| jessie | 1.9.909+abc941eb70-1 | amd64,armel,armhf,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 1.10.1-1 | amd64,armel,armhf,hurd-i386,i386,ia64,kfreebsd-amd64,kfreebsd-i386,mips,mipsel,powerpc,s390,s390x,sparc |
| Debtags of package workrave: |
| hardware | input |
| interface | x11 |
| role | program |
| scope | utility |
| suite | gnome |
| uitoolkit | gtk |
| use | monitor |
| x11 | application, applet |
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License: DFSG free
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Workrave is a program that assists in the recovery and prevention of
Repetitive Strain Injury (RSI). The program frequently alerts you to
take micro-pauses, rest breaks and restricts you to your daily limit.
It includes a system tray applet that works with GNOME and KDE
and has network capabilities to monitor your activity even if
switching back and forth between different computers is part of your
job.
Workrave offers many more configuration options than other similar
tools.
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Official Debian packages with lower relevance
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Cl-pubmed
Common Lisp package to query Pubmed medical literature database
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| Versions of package cl-pubmed |
| Release | Version | Architectures |
| squeeze | 2.1.3-5 | all |
| wheezy | 2.1.3-5 | all |
| jessie | 2.1.3-5 | all |
| sid | 2.1.3-5 | all |
| Debtags of package cl-pubmed: |
| devel | library, lang:lisp |
| field | biology |
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License: DFSG free
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This library has functions for querying the PubMed medical literature
database and parsing the XML results into Common Lisp objects. This package
uses the cl-aserve for HTTP fetches.
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Cycle
calendar program for women
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| Versions of package cycle |
| Release | Version | Architectures |
| squeeze | 0.3.1-7 | all |
| wheezy | 0.3.1-8 | all |
| jessie | 0.3.1-8 | all |
| sid | 0.3.1-8 | all |
| Debtags of package cycle: |
| interface | x11 |
| role | program |
| uitoolkit | wxwidgets |
| use | timekeeping |
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License: DFSG free
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Cycle is a calendar for women. Given a cycle length or statistics for
several periods, it can calculate the days until menstruation, the days
of "safe" sex, the fertile period, and the days to ovulations, and
define the d.o.b. of a child. It allows the user to write notes and
helps to supervise the administration of hormonal contraceptive tablets.
Possibilities of the program:
- Calculate days of menstruation, based on the length of the cycle or
on statistics of previous periods.
- Calculate days of "safe" sex, fertile period and day to ovulations.
- Definition of D.O.B. (Date Of Birth) of a child
- Allows to write notes.
- Helps to supervise reception of hormonal contraceptive tablets.
- Multiple users allowed. Data is protected by a password for every
user.
NOTE: This program is not a reliable contraceptive method. It does
neither help to prevent sexual transmision diseases like AIDS. It is
just an electronic means of keeping track of some of your medical data
and extract some statistical conclusions from them. You cannot consider
this program as a substitute for your gynecologist in any way.
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Entangle
Tethered Camera Control & Capture
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| Versions of package entangle |
| Release | Version | Architectures |
| jessie | 0.5.1-1 | amd64,armel,armhf,i386,ia64,mips,mipsel,powerpc,s390,s390x,sparc |
| sid | 0.5.1-1 | amd64,armel,armhf,i386,ia64,mips,mipsel,powerpc,s390,s390x,sparc |
| Debtags of package entangle: |
| uitoolkit | gtk |
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License: DFSG free
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Entangle provides a graphical interface for "tethered shooting", aka
taking photographs with a digital camera completely controlled from the
computer.
Using Entangle is as easy as 1,2,3...
- Connect camera
- Launch Entangle
- Shoot photos
With a sufficiently capable digital SLR camera Entangle allows:
- Trigger the shutter from the computer
- Live preview of scene before shooting
- Automatic download and display of photos as they are shot
- Control of all camera settings from computer
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Mencal
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| Versions of package mencal |
| Release | Version | Architectures |
| squeeze | 2.3-9 | all |
| wheezy | 2.3-9 | all |
| jessie | 2.3-9 | all |
| sid | 2.3-9 | all |
| Debtags of package mencal: |
| field | medicine |
| interface | commandline |
| role | program |
| scope | utility |
| use | timekeeping |
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License: DFSG free
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Mencal is a menstruation calendar written in Perl.
It is a simple variation of the well-known Unix command cal. The main
difference is that you can have some periodically repeating days highlighted
in color. This can be used to track menstruation (or other) cycles
conveniently.
Author: C. McCohy mccohy@kyberdigi.cz
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Debian packages in contrib or non-free
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Mssstest
Normalisation of disease scores for patients with Multiple Sclerosis
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| Versions of package mssstest |
| Release | Version | Architectures |
| squeeze | 3.0-2 (non-free) | i386 |
| wheezy | 3.0-3 (non-free) | amd64,i386 |
| jessie | 3.0-3 (non-free) | amd64,i386 |
| sid | 3.0-3 (non-free) | amd64,i386 |
| Debtags of package mssstest: |
| field | medicine |
| interface | commandline |
| role | program |
| scope | utility |
| use | checking |
| works-with | people |
| works-with-format | plaintext |
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License: non-free
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MSSStest is a program for implementing the method described in the
article The Multiple Sclerosis Severity Score. R. Roxburgh S. Seaman et
al. (2004), accepted for publication by Neurology. It calculates MSSS
scores and uses these scores to test for differences between disease
progression rates in different groups defined by genotype at some locus. A
brief description of the method is given below.
Please cite:
R H S R Roxburgh, S R Seaman, T Masterman, A E Hensiek, S J Sawcer, S Vukusic, I Achiti, C Confavreux, M Coustans, E le Page, G Edan, G V McDonnell, S Hawkins, M Trojano, M Liguori, E Cocco, M G Marrosu, F Tesser, M A Leone, A Weber, F Zipp, B Miterski, J T Epplen, A Oturai, P Soelberg Sorensen, E G Celius, N Tellez Lara, X Montalban, P Villoslada, A M Silva, M Marta, I Leite, B Dubois, J Rubio, H Butzkueven, T Kilpatrick, M P Mycko, K W Selmaj, M E Rio, M Sa, G Salemi, G Savettieri, J Hillert and D A S Compston:
Multiple Sclerosis Severity Score: using disability and disease duration to rate disease severity.
(PubMed,eprint)
Neurology
64(7):1144-51
(2005)
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